Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02472 ATGTCAGAAAAAATTATTGAGGATGTAAAGGAGAAAGTAATTGACGATACTCCTTCTCATAATCAAGACCATTGTGAGAAATCTGAGGAACAAATAACAGGTCCAGATGAGAAAGGGGAAAATCCCATGCCTTCACAGCAACAAGAGGAGGAGACCATCAAGAAGAAGTACGGAGGAATAGTGCCAAAGAAGCCTCCTTTGATTTCAAAAGACCATGAACGTGCCTTTTTCGATTCTGCTGATTGGGCACTAGGGAAGCAAGGAGGAGCTCAAAAACCTAAAGGACCACTTGAAGCACTCAGGCCAAAGTTGCAGCCAACCCCACATCAGCAAGTCCGTTCAAGACGCTCGGCTTATGCTCCTGCCGATGATAGTGAAGGGACTGATGGCAATATTGACCCCGCTGCTGAGGATCAGCAATCCACATTAGAAAGTGGCTGCAATGACCACGTTTCTGAAGACAAAGTGTGCAAGGAATAA 480 45.21 MSEKIIEDVKEKVIDDTPSHNQDHCEKSEEQITGPDEKGENPMPSQQQEEETIKKKYGGIVPKKPPLISKDHERAFFDSADWALGKQGGAQKPKGPLEALRPKLQPTPHQQVRSRRSAYAPADDSEGTDGNIDPAAEDQQSTLESGCNDHVSEDKVCKE* 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26493377 26495161 - CsaV3_5G032910.1 Csa05g02472 530859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02472 159 PANTHER ENDOSULFINE 1 140 IPR006760 -
Csa05g02472 159 Pfam cAMP-regulated phosphoprotein/endosulfine conserved region 44 118 IPR006760 -
Csa05g02472 159 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 19-RELATED PROTEIN 1 140 - -
Csa05g02472 159 MobiDBLite consensus disorder prediction 1 36 - -
Csa05g02472 159 MobiDBLite consensus disorder prediction 1 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02472 - - - csv:101217483 323.553
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01775 Csa-Chr3:13332090 Csa05g02472 Csa-Chr5:26493377 9.04E-40 dispersed
Csa05g02472 Csa-Chr5:26493377 Csa06g01755 Csa-Chr6:15457894 1.74E-16 dispersed
Csa05g02472 Csa-Chr5:26493377 Csa03g01506 Csa-Chr3:11164778 4.64E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g930 . . . . . . Bma14g01654 . Cmo04g01749 Cmo18g01155 . Cma18g01134 . Car18g01047 Sed06g1513 Cpe09g00191 Cpe01g01476 Bhi07g01542 Tan04g1062 Cmetu06g1630 Lac13g0333 . . . Cla05g02429 Cam05g2612 Cec05g2646 Cco05g2684 Clacu05g2614 Cmu05g2467 Cre05g2583 . . Cone6ag0573 Cone9ag0579 Lsi04g00402 Csa05g02472 Chy10g01019 Cme10g00399 . Blo11g00782 . . Bpe11g01649 . . . . . . Cma04g01670 . Car04g01708 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001300 3 3 2 3 2 2 4 2 2 1 2 2 3 2 2 4 2 3 4 1 2 2 3 1 2 2 1 8 3 2 75