Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02478 ATGACGAGGGCTTTTAGAAGACGAACTTTGTATTCAAGGCCTATTGATCGCTTCCGATTCCGAGCATCGGCGGACGGTGCTACGAAATCTGGATTCATCAGAGATATGAAGCTGAAGGAGATCTTGACTGCTTTGTTTATTGGTCTTCCGTTGGTTGTTTTTGTTGTTTTGTTGTTTAGGAATTCAACGGTGGATCTTTTTCTGGGTTTTGCTGAAGCCAGAGCATTGGAAAGAGTGGCCAATAATGGCGGTTCTGAGAGTTCAGGTTCAGAAAACAGTTCCTCTCGACTTTCCAATGGAGACAAGCTTATTGGAGGACTTCTAATTCCTGGATTTGATGAAGGATCATGCTTGAGTAGATATCAATCCAGTTTATATCGAAGAACTTCAACCAACAAACCTTCTTCTTACCTCCTCTCGATGCTTAGAGACTACGAAGCACTTCATCAACGGTGTGGCCCCCATACGAAACCATATGATGAGGCAGTAGAGCAACTTAGATCTGGTAATAGTGTTAGTTTGACAGAGTGTAAATATGTTGTGTGGATGTCTTATAGTGGCTTGGGAAACAAGATACTCACTTTGGCTTCTGCATTCCTCTATGCCCTCCTTACCAATCGTGTCTTGCTAGTTGATCCAGGGAAGGATATGGCTGATCTATTTTGTGAGCCCTTCCCAGAAAAATCTTGGTTGCTCCCAAATGACTTCCCCTTGGTGGATCAATTCAGCAACTTCGATTCAAAATCTCCTAACTGTCATGGAAATATGCTTAAGATGAACACTCTAAATACGTCGATAGAATCAGTCCCATCCTATCTATACCTACATTTGACTCATGATTATGATGATCACGACAAGCTGTTTTTCTGTGATCAAGAACAGGCTCTTTTAGGTAGGGTCCCGTGGCTTATACTGAAGACAGATAACTACTTTGTTCCATCTCTCTTCTTGATCCCATCTTTCGAGCAGAAATTGAGTAACTTATTCCCGCAAAAAGACACCATCTTCCATCATCTAGGCCGTTATCTTTTTCACCCATCAAATCATGTTTGGGGTCTAATAACAAGATACTATAAAGCATATCTAGCAAGTGCAGATGAAAGAATAGGAATTCAAGTAAGAGTGTTCAAGAGTGAACCGGGGCCATTCCAACATATAACCGATCAAATTCTAGGCTGTACTCTTAAGGAGAAGCTACTGCCTGAGGTAGACAAGGAAGGCTCCTCCTCCGTGCCTCTGGAACGCCCAAGAGTGAAAGCTGTTTTGATGACATCTTTAAGTTCTGGATACTATGAACAATTGAGAACCTTGTACTGGGAATACCCGACTAAGACCGGAGATGTCATTACAGTTCATCAGCCAAGCTACGAAATGTATCAGCAGACAGAGAAGAAGACTCACAATAGGAAAGCATGGGCAGAAATGTACCTTCTGAGTTTGAGTGATGTATTGGTGACCAGTGCATGGTCAACATTCGGGTATGTGGCTCAAGGGCTCGGCGGATCAAAGCCATGGATTCTCTACAAGGCAGAGAACATGACCACGCCCAATCCACCATGTCGTAGGGCGATGTCAATGGAGCCTTGTTTTCATGCTCCTCCATTCTATGACTGCAAAGCAAAGAAAGGAATAGATACGGGTGAAGTTGTTCCCCATGTAAGACATTGTGAAGACATGAGCTGGGGGCTTAAGCTTGTTCACCATGAGGATTTATAA 1716 43.07 MTRAFRRRTLYSRPIDRFRFRASADGATKSGFIRDMKLKEILTALFIGLPLVVFVVLLFRNSTVDLFLGFAEARALERVANNGGSESSGSENSSSRLSNGDKLIGGLLIPGFDEGSCLSRYQSSLYRRTSTNKPSSYLLSMLRDYEALHQRCGPHTKPYDEAVEQLRSGNSVSLTECKYVVWMSYSGLGNKILTLASAFLYALLTNRVLLVDPGKDMADLFCEPFPEKSWLLPNDFPLVDQFSNFDSKSPNCHGNMLKMNTLNTSIESVPSYLYLHLTHDYDDHDKLFFCDQEQALLGRVPWLILKTDNYFVPSLFLIPSFEQKLSNLFPQKDTIFHHLGRYLFHPSNHVWGLITRYYKAYLASADERIGIQVRVFKSEPGPFQHITDQILGCTLKEKLLPEVDKEGSSSVPLERPRVKAVLMTSLSSGYYEQLRTLYWEYPTKTGDVITVHQPSYEMYQQTEKKTHNRKAWAEMYLLSLSDVLVTSAWSTFGYVAQGLGGSKPWILYKAENMTTPNPPCRRAMSMEPCFHAPPFYDCKAKKGIDTGEVVPHVRHCEDMSWGLKLVHHEDL* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26514398 26517501 - CsaV3_5G032970.1 Csa05g02478 530865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02478 571 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 6 570 - -
Csa05g02478 571 Pfam Xyloglucan fucosyltransferase 87 539 IPR004938 GO:0008107|GO:0016020|GO:0042546
Csa05g02478 571 Gene3D - 174 225 - -
Csa05g02478 571 PANTHER FUCOSYLTRANSFERASE 2-RELATED 6 570 IPR004938 GO:0008107|GO:0016020|GO:0042546
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00754 Csa-Chr4:5166215 Csa05g02478 Csa-Chr5:26514398 0 transposed
Csa01g00565 Csa-Chr1:3648040 Csa05g02478 Csa-Chr5:26514398 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02478 K13681 - csv:101216541 1131.7