Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02480 ATGAAGTTTGAGAATGAATTCAAGAAACAAATAGTGCCTGAATGGGCGGACGCTTATGTTGATTACGATGGCTTGAAAAGATTATTGCGTGAGATTTCCTGTGAGAGACAGTCCAGAGTATCATTTGGGCGCTCAAAGAAGAAGCCAATAGTGAACGGAAAATGCAGAGAGTTAACCTCTCAGCCAAGAAAATGCCAAATCATTAAGGATATTGAGAATCAAGTTGGAGATGTTGACAGATCACTGCAAAATGACCACCTTCAACTCTCCAAGGCTTGTTCTCACAGCAAGTTTCAAGAAATTTCAGAGATTGAGATGGCTTTTCTTAGAAAATTTGATGAAGAACTCATCAAGGTCAATTCTTTCTATAAGGAGAATGTAGAGGCTGTAACTGAAGAAGCAAGTGTTTTAAGTAAACAAATGAAGACTTTGGTTGCATTGCGAAGGAAGATGGAGGTCGCCCCTCTGAATGAGAGACACGATTCTCATGCTGAAGTTTCTACAATCCCCTTAAGCTCCACTTTTCAAACGCCTTGTCCTTCAGGAAGCGTGCACTTGGATTCAGCAGTTGAAACGGATGCCAACTATCAGCATGAACAAAAAGAGTCTCATTGGGGTTCAGAATTGGATGAAGTTCACACAGAAGCAAGTGGCAATAAACATGTAGAAGAAGTCACGACGATGGAAAACAACCAATATTCCCAAGAAATTCTTAAGCATGTGAAAGTCGTCGATGTGTTCAGCTCCCATAAATCTACATCGAAAGATATTTGCAAGAGTTCTAAGGATGATGACTTGGATGTTGATCAAGATGGCCGAAGTAAGATTGAAGAACAGTTGAAAAAAGCATTTGCAGAATTTTATCAGAAGCTTCATTCGTTGAAGCAATATAGTTTTATGAACCTGTCAGCATTTGCGAGAATCATGAGTAAGTATGAGAAGATTTCATCAAAGACAGCAGCCAAGTCATACATGGAAATTGTGGATAATTCGTACCTTGGAAGTTCAGATGAGGTTGCCGATCTCATGAAGATGGTGGAAATTAATTTCGTCAAGAACTTTTCAAACTCAAATTATGCAGAAGCCATGAAGCATTTGAGGCCAAAAACCAAAAGAGAAAAACACAGCGTGATATTTTCTTCAGGCTTCCTATCTGGTTGCACGGTGGCACTATTTGTGGCAACTGTTTTGAAAATAGCATCTCAAAAATTGATGGAGAGGGAGGAGGGCACTCATTACATGGAAAATATATTTCCACTTTACAGTTTGTTTGGCTTTGTTGTCCTACACATGCTCATGTACGCAACAGACTTGTACTTCTGGAGACGTTGTCGAGTTAACTATCCATTTATCTTTGGTTCCAAGAGAGGAACTGCATTGGGTTGGCAAGAAGTTTTCCTGCTTAGTGCTGGTTTTGCGGTACTTGCATCTGCCAGTTTCCTGGCAAACTTATATTTGGACAGAGATCCTAGCACTCAGAAGTATAGAACAGAAGCTGAGAAGGTTCCTTTATTCACAACAGCACTTATTCTTCTCATCACCTTTTGCCCATTCAACATTCTATACAAGTCAAGTCGTTTTTTCTTCATTCGCTGTATCCTACGCTGTATATCTGCTCCTCTGTGCAAGGTTAAGTTTCCAGATTATTTTTTGGCAGATCAGCTTACTAGTCAGGTACAAGCTTCACGATGTATTGTGTTGTATATTTGCTACTATGGTTTAGGAGAATACTCAAGGAAGCAAAACAAGTGCCACACGCGTGGTGTCTACAATACTCTCTCCTTCATCATTGCTGTCATACCATTTTGGATGCGATTCTTACAAGTATGA 1830 39.89 MKFENEFKKQIVPEWADAYVDYDGLKRLLREISCERQSRVSFGRSKKKPIVNGKCRELTSQPRKCQIIKDIENQVGDVDRSLQNDHLQLSKACSHSKFQEISEIEMAFLRKFDEELIKVNSFYKENVEAVTEEASVLSKQMKTLVALRRKMEVAPLNERHDSHAEVSTIPLSSTFQTPCPSGSVHLDSAVETDANYQHEQKESHWGSELDEVHTEASGNKHVEEVTTMENNQYSQEILKHVKVVDVFSSHKSTSKDICKSSKDDDLDVDQDGRSKIEEQLKKAFAEFYQKLHSLKQYSFMNLSAFARIMSKYEKISSKTAAKSYMEIVDNSYLGSSDEVADLMKMVEINFVKNFSNSNYAEAMKHLRPKTKREKHSVIFSSGFLSGCTVALFVATVLKIASQKLMEREEGTHYMENIFPLYSLFGFVVLHMLMYATDLYFWRRCRVNYPFIFGSKRGTALGWQEVFLLSAGFAVLASASFLANLYLDRDPSTQKYRTEAEKVPLFTTALILLITFCPFNILYKSSRFFFIRCILRCISAPLCKVKFPDYFLADQLTSQVQASRCIVLYICYYGLGEYSRKQNKCHTRGVYNTLSFIIAVIPFWMRFLQV* 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26522669 26527656 + CsaV3_5G032990.1 Csa05g02480 530867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02480 609 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 10 1 608 - -
Csa05g02480 609 ProSiteProfiles SPX domain profile. 1 326 IPR004331 -
Csa05g02480 609 Pfam EXS family 418 608 IPR004342 GO:0016021
Csa05g02480 609 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 608 - -
Csa05g02480 609 Pfam SPX domain 1 326 IPR004331 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02480 - - - csv:101223160 1191.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02480 Csa-Chr5:26522669 Csa05g03003 Csa-Chr5:30338753 2.21E-137 dispersed
Csa05g02480 Csa-Chr5:26522669 Csa05g02482 Csa-Chr5:26530988 5.88E-142 proximal
Csa05g02480 Csa-Chr5:26522669 Csa05g03001 Csa-Chr5:30327522 2.69E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02480 . . . . . . . . . . . . . . . Car04g01715 . . . . . . . . . . . . . . . . . . . . .
Vvi14g1574 . . . . . . Bma14g01453 Bma13g00154 . . . . . . . . . Bhi06g00377 Tan11g0492 . . . . Lcy10g2019 . . . . . . . . . . . Lsi02g01468 Csa05g02480 . . . . Bda07g01343 . Bpe11g00072 Bpe11g01450 . . . . Cmo15g00267 . Cma15g00255 . Car15g00257 . . . . . . . . . Cla09g01765 Cam09g1855 Cec09g1917 Cco09g2010 . . Cre01g0654 . . Chy09g00229 Cme09g00247
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193