Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02482 ATGAAGTTTGGCAAACAGTTTACTGCTCAAATGGTTCCAGAATGGCAACAAGCTTACATGGATTATGATTTTCTCAAATCCCTCTTGAAGCAAATTGACACTTTCAACAAAACCCATGCTAGAAACCAGCCCTCCAGTCATTCCGGCCAGCTCCGGCGAACCCTCACTCTCTATAGGGCTTTTAGTGGGTTAACGCTCCGTCACAGCCATAGCCATGGTCACGCTCATGGCCATGGTCATGCCCATAACAGCCACCCAGCAAGCCCTGCAGGTTCACCTCAGGATGGGGTGGAGGAGCAGGCGATATTGGTGAATGCGGTGAACCGGGACGGAACGAAGAAGTATCGGACGACGTTTTTGATGGCGGACGAGGAAGGAGGAGAGTATGAGTTGGTGTATTTCAGGTCATTGGATAGGGAGTTCAATAAAGTGGACAAGTTCTACAAGGCAAAAGTAGAGGAAGTTGTGAAGGAGGCAAGTGTTTTGAATAAGCAAATGAATGCTTTGATTGCTTTCAGAATAAAAGTGGAGAATCCAGAAGGTGTTTGGGATTTCTCCGGTGACCGGCGGGCGGAGGAGATTACAAGGCTGGCCACTGATATTGCTGTTTCAACTGCTGCTTTATCATCTTCTACTCCTTCTGGGGTCAGAGCTAGCAGAAGAGTTCATATAGCGATGGATTCCATAGAAGAAGGGTCGAGCCACAATGAGCGTAGTAGTCATAAACCGAACAATGAATCATCAAAAGACGAGGATGAAGATGAAAATGAAGATGAAAAGAAGAAATCAAAGGGCGGTGAAGATAATAGTGAAGGGAAATCAAGAAAAATGATGGCTAATAGACCACCTCCACTTGAACTTCTTGATCGTGTAACAATGAACACAACTACAGAAACCCCAAGATCCACCATTAAAGGCCTTCTCAATTTCCCAAAAAATTCTGAACTTCAATTCAATAAAGAAAATCTCAACAAAATTGAGAATCAACTCAAAAAGGCCTTTGTTGTGTTTTACCACAAACTCAGACTACTCAAGAGCTTCAGCTTCTTGAATACTTTGGCATTTTCAAAGATAATGAAGAAATATGATAAGATTACATCAAGAGATGCTGGAAAGTCATATATGAAGATGGTGGATAGCTCTTATCTTGGAAGCTCTGACGAGGTTTCTAAGTTAATGGAGAGGGTGGAAGCTGCGTTTATCAAACATTTTTGCAATGCTAATCGCACTAAAGGAATGAACATCTTGAGACCTAAAGCAAAGAAAGAAAGACATAGAACTACATTTTCAGTTGGTTTCTTTGCTGGCTGTGCTATAGCTCTTGTCGTCGCCCTCATTTTTATTACACGAGCGCGACATATAATAAACAAAGAAGGCAGCACTCAGTATATGGAAACCATGTTTCCGCTTTACAGCTTGTTCGGATTTGTTGTCTTGCACTTACTAATGTATGCAGCAAACATATACTTTTGGAGGCGATACCAAGTGAATTATTCCTTCATATTTGGTTTCAAACAAGGCACTGAATTGGCCTATCGAGAGGTTCTTCTTCCCAGTTTTGCTTTGGCAACTCTTGCTTTAGCTTGTGTTCTTTCTAATCTTGACATGGAGATGGACTCTGTTACCCAGTCATATCAAGCAGTGACTGAACTTCTGCCTTTGGTTTTGCTCCTTGTTGTGATTGTAGTCTTCTTATGTCCACTCAACATCTTATATCGCTCTAGTCGCTTCTTCTGTATAAGAACTTTGTACCACTGTATATGTGCTCCTCTCTACACGGTTATCTTTCCCGATTTCTTCTTAGCAGATCAGTTAACCAGCCAGGTGCAAGCACTTCGTAGCTTGGAATTCTACATTTGCTATTACGGTTGGGGAGACTATAAGCATAGACAGAATACTTGTGGAACTAACACTGTGTTCAACACTTTCAGCTTTATCATAGCTGTTATTCCATATTCGTCACGTCTCCTTCAGTGTCTCAGGAGATTGTATGAGGAGAAAGACGCAATGCAGGGATATAATGGAATCAAGTACTTCTTGACAATTGTAGCTGTGTGCTTAAGGACAGCTTACAGTCTGAACAGAGGAGTAATAGCCTGGAAAGTGCTAGCCGCAATTTTCTCGGCCCTTGCTGCCATTATATGCACGTATTGGGACATCGCCATTGACTGGGGCCTTCTGCAGCGCCACTCGAAGAACCGATGGTTGAGAGACAAGCTACTTGTTGGTCACAATAGTGTATACTATGTTGCAATGGTCTTGAATGTGTTACTGAGGTTTGCTTGGCTGCAAACTGTGTTGGATTTTCAATTCTCCTTCCTGCATACCCAAGGTTTGATTACAATAGTGGCCAGCCTCGAGATCATTCGTCGTGGCATATGGAATTTCTTCAGGTTGGAGAATGAGCATCTGAACAATGTTGGGAAGTATCGTGCATTCAAATCTGTACCGCTACCTTTCAACTATGATGAAGATGATGACAAAGATGATTAA 2493 42.4 MKFGKQFTAQMVPEWQQAYMDYDFLKSLLKQIDTFNKTHARNQPSSHSGQLRRTLTLYRAFSGLTLRHSHSHGHAHGHGHAHNSHPASPAGSPQDGVEEQAILVNAVNRDGTKKYRTTFLMADEEGGEYELVYFRSLDREFNKVDKFYKAKVEEVVKEASVLNKQMNALIAFRIKVENPEGVWDFSGDRRAEEITRLATDIAVSTAALSSSTPSGVRASRRVHIAMDSIEEGSSHNERSSHKPNNESSKDEDEDENEDEKKKSKGGEDNSEGKSRKMMANRPPPLELLDRVTMNTTTETPRSTIKGLLNFPKNSELQFNKENLNKIENQLKKAFVVFYHKLRLLKSFSFLNTLAFSKIMKKYDKITSRDAGKSYMKMVDSSYLGSSDEVSKLMERVEAAFIKHFCNANRTKGMNILRPKAKKERHRTTFSVGFFAGCAIALVVALIFITRARHIINKEGSTQYMETMFPLYSLFGFVVLHLLMYAANIYFWRRYQVNYSFIFGFKQGTELAYREVLLPSFALATLALACVLSNLDMEMDSVTQSYQAVTELLPLVLLLVVIVVFLCPLNILYRSSRFFCIRTLYHCICAPLYTVIFPDFFLADQLTSQVQALRSLEFYICYYGWGDYKHRQNTCGTNTVFNTFSFIIAVIPYSSRLLQCLRRLYEEKDAMQGYNGIKYFLTIVAVCLRTAYSLNRGVIAWKVLAAIFSALAAIICTYWDIAIDWGLLQRHSKNRWLRDKLLVGHNSVYYVAMVLNVLLRFAWLQTVLDFQFSFLHTQGLITIVASLEIIRRGIWNFFRLENEHLNNVGKYRAFKSVPLPFNYDEDDDKDD* 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26530988 26536992 - CsaV3_5G033010.1 Csa05g02482 530869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02482 830 MobiDBLite consensus disorder prediction 228 299 - -
Csa05g02482 830 Pfam EXS family 467 804 IPR004342 GO:0016021
Csa05g02482 830 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 3 1 830 - -
Csa05g02482 830 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 830 - -
Csa05g02482 830 ProSiteProfiles EXS domain profile. 635 830 IPR004342 GO:0016021
Csa05g02482 830 MobiDBLite consensus disorder prediction 69 95 - -
Csa05g02482 830 MobiDBLite consensus disorder prediction 228 275 - -
Csa05g02482 830 CDD SPX_PHO1_like 2 372 IPR034092 -
Csa05g02482 830 Pfam SPX domain 1 378 IPR004331 -
Csa05g02482 830 ProSiteProfiles SPX domain profile. 1 376 IPR004331 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02482 - - - csv:101215812 1524.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01709 Csa-Chr5:20322929 Csa05g02482 Csa-Chr5:26530988 0 dispersed
Csa05g02482 Csa-Chr5:26530988 Csa05g03001 Csa-Chr5:30327522 0 dispersed
Csa05g02480 Csa-Chr5:26522669 Csa05g02482 Csa-Chr5:26530988 5.88E-142 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g966 . . . . . . . . Cmo04g01756 . . . . . . . Cpe01g01483 . . . . . . . . . . . . . . . . . . . Csa05g02482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi14g1575 Blo10g00142 Blo11g00573 . . . . . . . . . . . . . . Cpe13g00962 Bhi06g00375 Tan11g0488 . . . . . . . . . . . . . . . . Lsi02g01467 Csa05g02482 . . . . . Bda12g00171 . . . . . Cmo04g02908 Cmo15g00265 Cma04g02778 Cma15g00253 Car04g02676 Car15g00256 . Cpe01g02407 . . . . . . . Cla09g01763 Cam09g1854 . Cco09g2009 . . Cre01g0655 . . Chy09g00228 Cme09g00246
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193