Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g02484 | ATGAGCTTTGAACATTCCGGAACTCCCGCCGGTTCACCGTCGCCGGGGAGCACCGGAGGCAGGGGAAACATATCGTCGTCATCGGCGTCCGGGACGAGTAAGGAGAAGCAAAAGGAGAAAGCAAGAGTGAGTAGGACGTCACTCATATTGTGGCACGCTCATCAGAATGATCCATCTGCTGTTCGTAAGCTTCTGGAGGAGGATCAATCCCTTGTTCATGCTAGAGATTACGACAGCCGCACTCCCCTTCATGTTGCTTCGCTTCATGGTTGGATCGATGTTGCCAAGTGTTTGATTGAACATGGTGCTGATGTTAATGCCCAAGATCGCTGGAAGAACACTCCGCTAGCTGATGCCGAAGGAGCTAAAAAGCATGGCATGATTGAGCTGTTAAAATCATATGGTGGCCTTTCCTATGGCCAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCCTCCTCCTCTGCCAAATAAATGTGACTGGGAAATTGATCCTTCTGAACTGGATTTTTCAAACTCAGCTATTATAGGCAAGGGGTCCTTCGGGGAAATTTTGAAGGCCTATTGGCGTGGAACCCCTGTAGCTGTCAAACGTATTCTTCCATCACTTTCAGATGATAGACTTGTGATTCAGGACTTTCGACATGAGGTTAATCTGTTGGTGAAGCTACGCCACCCTAACATTGTCCAATTTCTTGGAGCTGTCACTGAGAAGAAACCACTTATGCTAATCACTGAATACTTGAGAGGGGGTGATCTTCACCAGTACCTCAAGGACAAAGGTTCGCTCAGTCCTGCAACGGCCATCAATTTTGCGCTGGACATTGCCCGGGGAATGGCTTATCTCCACAATGAACCAAATGTTATAATTCACCGTGATCTAAAACCAAGGAACGTTCTTTTAGTGAATTCTGGTGCGGACCATCTAAAAGTTGGTGATTTCGGTCTAAGCAAGCTCATCAAGGTTCAAAATTCACACGATGTTTACAAAATGACTGGCGAGACCGGGAGTTACCGTTATATGGCTCCTGAAGTTTTTAAACACAGAAAATATGACAAGAAGGTGGATGTTTTTTCTTTTGCAATGATATTATACGAGATGCTTGAGGGAGACCCTCCACTGGCAAATTATGAGCCATATGAAGCTGCTAAGTATGTGGCTGAAGGTCACAGACCGATGTTCCGTGCGAAAGGATACCTTCCTGTTCTGAGAGAGTTGACAGAAGAATGTTGGGCATCTGATATGAACAAGAGACCTTCTTTCCTGGAAATTCTCAAAAGACTTGAAAAGATCAAGGAAAATCTACCAACTGATCATCACTGGAATTTGTTCAATGCATAA | 1341 | 45.12 | MSFEHSGTPAGSPSPGSTGGRGNISSSSASGTSKEKQKEKARVSRTSLILWHAHQNDPSAVRKLLEEDQSLVHARDYDSRTPLHVASLHGWIDVAKCLIEHGADVNAQDRWKNTPLADAEGAKKHGMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPMFRAKGYLPVLRELTEECWASDMNKRPSFLEILKRLEKIKENLPTDHHWNLFNA* | 447 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 26553717 | 26559163 | - | CsaV3_5G033030.1 | Csa05g02484 | 530871 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g02484 | 446 | CDD | STKc_MAP3K-like | 176 | 428 | - | - | |
Csa05g02484 | 446 | ProSitePatterns | Protein kinases ATP-binding region signature. | 176 | 197 | IPR017441 | GO:0005524 | |
Csa05g02484 | 446 | SMART | ANK_2a | 78 | 107 | IPR002110 | GO:0005515 | |
Csa05g02484 | 446 | PIRSF | ILK | 3 | 446 | - | - | |
Csa05g02484 | 446 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Csa05g02484 | 446 | ProSiteProfiles | Protein kinase domain profile. | 170 | 442 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g02484 | 446 | SUPERFAMILY | Ankyrin repeat | 49 | 136 | IPR036770 | - | |
Csa05g02484 | 446 | Gene3D | Transferase(Phosphotransferase) domain 1 | 250 | 442 | - | - | |
Csa05g02484 | 446 | Gene3D | Phosphorylase Kinase; domain 1 | 155 | 249 | - | - | |
Csa05g02484 | 446 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 28 | 438 | - | - | |
Csa05g02484 | 446 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Csa05g02484 | 446 | ProSiteProfiles | Ankyrin repeat profile. | 78 | 110 | IPR002110 | GO:0005515 | |
Csa05g02484 | 446 | ProSiteProfiles | Ankyrin repeat region circular profile. | 78 | 110 | - | - | |
Csa05g02484 | 446 | Gene3D | - | 21 | 144 | IPR036770 | - | |
Csa05g02484 | 446 | Pfam | Protein tyrosine and serine/threonine kinase | 174 | 428 | IPR001245 | GO:0004672|GO:0006468 | |
Csa05g02484 | 446 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 289 | 301 | IPR008271 | GO:0004672|GO:0006468 | |
Csa05g02484 | 446 | Pfam | Ankyrin repeats (3 copies) | 45 | 109 | IPR002110 | GO:0005515 | |
Csa05g02484 | 446 | SUPERFAMILY | Protein kinase-like (PK-like) | 168 | 441 | IPR011009 | - | |
Csa05g02484 | 446 | SMART | serkin_6 | 170 | 435 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g02484 | 446 | PANTHER | SERINE/THREONINE-PROTEIN KINASE STY8-LIKE | 28 | 438 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g02484 | Csa-Chr5:26553717 | Csa06g01376 | Csa-Chr6:11696391 | 1.43E-105 | dispersed | |
Csa05g02484 | Csa-Chr5:26553717 | Csa06g03735 | Csa-Chr6:29804365 | 1.44E-105 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78276 | PF07714 | PK_Tyr_Ser-Thr | 8.50E-64 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g02484 | - | - | csv:101215575 | 872.078 |