Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02484 ATGAGCTTTGAACATTCCGGAACTCCCGCCGGTTCACCGTCGCCGGGGAGCACCGGAGGCAGGGGAAACATATCGTCGTCATCGGCGTCCGGGACGAGTAAGGAGAAGCAAAAGGAGAAAGCAAGAGTGAGTAGGACGTCACTCATATTGTGGCACGCTCATCAGAATGATCCATCTGCTGTTCGTAAGCTTCTGGAGGAGGATCAATCCCTTGTTCATGCTAGAGATTACGACAGCCGCACTCCCCTTCATGTTGCTTCGCTTCATGGTTGGATCGATGTTGCCAAGTGTTTGATTGAACATGGTGCTGATGTTAATGCCCAAGATCGCTGGAAGAACACTCCGCTAGCTGATGCCGAAGGAGCTAAAAAGCATGGCATGATTGAGCTGTTAAAATCATATGGTGGCCTTTCCTATGGCCAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCCTCCTCCTCTGCCAAATAAATGTGACTGGGAAATTGATCCTTCTGAACTGGATTTTTCAAACTCAGCTATTATAGGCAAGGGGTCCTTCGGGGAAATTTTGAAGGCCTATTGGCGTGGAACCCCTGTAGCTGTCAAACGTATTCTTCCATCACTTTCAGATGATAGACTTGTGATTCAGGACTTTCGACATGAGGTTAATCTGTTGGTGAAGCTACGCCACCCTAACATTGTCCAATTTCTTGGAGCTGTCACTGAGAAGAAACCACTTATGCTAATCACTGAATACTTGAGAGGGGGTGATCTTCACCAGTACCTCAAGGACAAAGGTTCGCTCAGTCCTGCAACGGCCATCAATTTTGCGCTGGACATTGCCCGGGGAATGGCTTATCTCCACAATGAACCAAATGTTATAATTCACCGTGATCTAAAACCAAGGAACGTTCTTTTAGTGAATTCTGGTGCGGACCATCTAAAAGTTGGTGATTTCGGTCTAAGCAAGCTCATCAAGGTTCAAAATTCACACGATGTTTACAAAATGACTGGCGAGACCGGGAGTTACCGTTATATGGCTCCTGAAGTTTTTAAACACAGAAAATATGACAAGAAGGTGGATGTTTTTTCTTTTGCAATGATATTATACGAGATGCTTGAGGGAGACCCTCCACTGGCAAATTATGAGCCATATGAAGCTGCTAAGTATGTGGCTGAAGGTCACAGACCGATGTTCCGTGCGAAAGGATACCTTCCTGTTCTGAGAGAGTTGACAGAAGAATGTTGGGCATCTGATATGAACAAGAGACCTTCTTTCCTGGAAATTCTCAAAAGACTTGAAAAGATCAAGGAAAATCTACCAACTGATCATCACTGGAATTTGTTCAATGCATAA 1341 45.12 MSFEHSGTPAGSPSPGSTGGRGNISSSSASGTSKEKQKEKARVSRTSLILWHAHQNDPSAVRKLLEEDQSLVHARDYDSRTPLHVASLHGWIDVAKCLIEHGADVNAQDRWKNTPLADAEGAKKHGMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPMFRAKGYLPVLRELTEECWASDMNKRPSFLEILKRLEKIKENLPTDHHWNLFNA* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26553717 26559163 - CsaV3_5G033030.1 Csa05g02484 530871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02484 446 CDD STKc_MAP3K-like 176 428 - -
Csa05g02484 446 ProSitePatterns Protein kinases ATP-binding region signature. 176 197 IPR017441 GO:0005524
Csa05g02484 446 SMART ANK_2a 78 107 IPR002110 GO:0005515
Csa05g02484 446 PIRSF ILK 3 446 - -
Csa05g02484 446 MobiDBLite consensus disorder prediction 1 32 - -
Csa05g02484 446 ProSiteProfiles Protein kinase domain profile. 170 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02484 446 SUPERFAMILY Ankyrin repeat 49 136 IPR036770 -
Csa05g02484 446 Gene3D Transferase(Phosphotransferase) domain 1 250 442 - -
Csa05g02484 446 Gene3D Phosphorylase Kinase; domain 1 155 249 - -
Csa05g02484 446 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 28 438 - -
Csa05g02484 446 MobiDBLite consensus disorder prediction 1 43 - -
Csa05g02484 446 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Csa05g02484 446 ProSiteProfiles Ankyrin repeat region circular profile. 78 110 - -
Csa05g02484 446 Gene3D - 21 144 IPR036770 -
Csa05g02484 446 Pfam Protein tyrosine and serine/threonine kinase 174 428 IPR001245 GO:0004672|GO:0006468
Csa05g02484 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Csa05g02484 446 Pfam Ankyrin repeats (3 copies) 45 109 IPR002110 GO:0005515
Csa05g02484 446 SUPERFAMILY Protein kinase-like (PK-like) 168 441 IPR011009 -
Csa05g02484 446 SMART serkin_6 170 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02484 446 PANTHER SERINE/THREONINE-PROTEIN KINASE STY8-LIKE 28 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02484 Csa-Chr5:26553717 Csa06g01376 Csa-Chr6:11696391 1.43E-105 dispersed
Csa05g02484 Csa-Chr5:26553717 Csa06g03735 Csa-Chr6:29804365 1.44E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78276 PF07714 PK_Tyr_Ser-Thr 8.50E-64 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02484 - - csv:101215575 872.078