Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02490 ATGGGTGAGGATGATGAACAGCCGCCGCCGCCGCCGCTGCCCTCGAAATCTAAGTCTTTTCCGTTGAGACCCACTATTAATCTGCCACCACGGACTTCTATGGAGTCCCTCTTCAGCAGTGGCCCGGGTTTGGGATTTGGGTTCAGCCCAGGTCCGATGACTCTTGTCTCCAGCTTCTTCTCTGATTCCGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCATCTCCGGTGACTGCCGTTCCTTCGTCGTCGTCTGAGTTTAAGGCTTCTCCCGGTTTGCTCGATTCTCCGGGGCTTCAAGGACCTTTTGGAATGACACATCAGCAGGCTTTGGCTCAGGTTACTATGCACGCTGTAGAAGCCTATTCTCTTAATCAAATGCAAGCCTCGTCTTTTTCTTCATCGGTAGCACCTTCTGCATCCTCCTTGCAGCTTTTGACATCCTTACCGGGAGAGAAGACTAATGATCAGCTGATGCAACTTCCATTCCAGAACTCTACAGTTGCATCCAAGGAGATATCGGAGAACTCTCAATCAGAGCAGAGATTGCAATTGTCTTCGTGTAATGTTGATAGACCTGCTGATGACGGATACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTATAAGTGCACGCACCCGAATTGTCCTGTCAAGAAAAAGGTTGAAAGATCTTTGGAAGGACAAGTTACTGAAATTATCTACAAGGGTGAGCACAACCATAAACGGCCTCAACCAAATAAGCGAGCAAAGGATGTTGGAAATTCTAATGGATATTCAATTATTCATGGAAATCTTGAGCTATCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTGGACGAGGAGACATCTATCTCTTCCATTAGAAAGAAGGATCAAGAATTAAGTCGTGTCACAAACGATCAGTTCTTGGGCAATAGTGATGGTGAGGGAGGGAGTGAGACAGAAACTGGAGTGAACCGAAAAGATGAAGATGAACCTGCTGCCAAGAGACGACAACAAGTGAAGTTGATCTATTGGACGATGGTTACAGGTGGCGTAAGTACGGGCAGAAAATTGTTAAGGGAAACCCTTACCCAAGGAGCTATTATAAATGCACAACTCCAGGATGCAATGTTCGTAAACATGTAG 1173 45.95 MGEDDEQPPPPPLPSKSKSFPLRPTINLPPRTSMESLFSSGPGLGFGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVTAVPSSSSEFKASPGLLDSPGLQGPFGMTHQQALAQVTMHAVEAYSLNQMQASSFSSSVAPSASSLQLLTSLPGEKTNDQLMQLPFQNSTVASKEISENSQSEQRLQLSSCNVDRPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVTEIIYKGEHNHKRPQPNKRAKDVGNSNGYSIIHGNLELSSQVQSGYLNKLDEETSISSIRKKDQELSRVTNDQFLGNSDGEGGSETETGVNRKDEDEPAAKRRQQVKLIYWTMVTGGVSTGRKLLRETLTQGAIINAQLQDAMFVNM* 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26596980 26600654 - CsaV3_5G033090.1 Csa05g02490 530877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02490 390 MobiDBLite consensus disorder prediction 173 192 - -
Csa05g02490 390 MobiDBLite consensus disorder prediction 310 344 - -
Csa05g02490 390 MobiDBLite consensus disorder prediction 249 269 - -
Csa05g02490 390 ProSiteProfiles WRKY domain profile. 199 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa05g02490 390 MobiDBLite consensus disorder prediction 1 18 - -
Csa05g02490 390 Pfam WRKY DNA -binding domain 199 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa05g02490 390 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 351 IPR044810 GO:0003700
Csa05g02490 390 MobiDBLite consensus disorder prediction 329 344 - -
Csa05g02490 390 SUPERFAMILY WRKY DNA-binding domain 197 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa05g02490 390 SMART WRKY_cls 198 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa05g02490 390 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 18 351 - -
Csa05g02490 390 MobiDBLite consensus disorder prediction 173 194 - -
Csa05g02490 390 Gene3D WRKY domain 183 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa05g02490 390 MobiDBLite consensus disorder prediction 312 328 - -
Csa05g02490 390 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02490 Csa-Chr5:26596980 Csa01g03336 Csa-Chr1:29902748 7.49E-15 dispersed
Csa05g02490 Csa-Chr5:26596980 Csa05g03014 Csa-Chr5:30396040 7.27E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31832 PF03106 WRKY 2.10E-26 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02490 - - csv:101214453 626.32