Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02491 ATGTCGGACGAGGAGCACCACTTCGAGTCCAAGGCCGACGCCGGAGCTTCCAAGACTTATCCCCAGCAGGCTGGAGCCATCCGCAAAAATGGATACATTGTCATCAAGGGCAGACCTTGCAAGGTTGTTGAGGTTTCAACCTCAAAGACTGGAAAGCACGGACATGCTAAATGTCACTTTGTTGGCATTGACATTTTCACTGCTAAAAAGCTTGAAGATATCGTCCCATCTTCACACAATTGTGATGTTCCTCATGTCAGTCGTACTGACTACCAGCTCATTGATATCTCCGAGGATGGATTTATTAGCCTGCTGACAGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCAACCGATGATGGTCTGCTGACCCAGATCAAGGATGGATTTGCTGAGGGGAAGGATCTGATTGTGACTGTCATGTCGTCAATGGGAGAGGAGCAGATCTGCGCTCTCAAGGACATAGGCCCAAAATAG 480 48.75 MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPTDDGLLTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK* 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26602098 26604651 - CsaV3_5G033100.1 Csa05g02491 530878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02491 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Csa05g02491 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Csa05g02491 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Csa05g02491 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Csa05g02491 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Csa05g02491 159 CDD S1_eIF5A 86 156 - -
Csa05g02491 159 Gene3D - 86 158 IPR012340 -
Csa05g02491 159 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Csa05g02491 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Csa05g02491 159 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Csa05g02491 159 MobiDBLite consensus disorder prediction 1 21 - -
Csa05g02491 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Csa05g02491 159 Gene3D - 1 85 IPR014722 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02429 Csa-Chr2:21449707 Csa05g02491 Csa-Chr5:26602098 1.86E-107 dispersed
Csa05g02491 Csa-Chr5:26602098 Csa04g02632 Csa-Chr4:25702900 1.61E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02491 K03263 K02180 csv:101214693 325.479