Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02498 ATGGCAACGATGACTTCCAAACCTCTCCTCCTCACTCTCCTCTGTTTCTTCACCATCTCCTCTGCTGAGTTCGTTAAAGTTTCAGTCAAAGGTGTCACCACCATTGCTCAAACTGACGACGATTTCATCTGTGCTACTTTAGATTGGTGGCCTCCTAATAAATGCGATTATGGCCAATGCCCATGGGGAAAAGCTGGCATTCCTAATTTGGATCTTCAGAATATTATCTTGGCCGAAGCAATCAAGGAGTTCAATCCTTTGAGAATCCGAGTTGGAGGGTCACTTCAAGATCAAATCATTTACAGAGTTGGAAAGTCATATAAGAATTGTCCTGAAATGAGGAAACAAAGTGATGGTTTGTTTGGATTCAGCAAAGGTTGTTTAACTATGCAACGATGGGATGAACTTAACGATTTTTTCAACAAAACATCAGCTCGTATTACATTTGGTTTAAATGCTTTAAAGGGTAAAAAACCAGCAAATGATGGAACTATCAATTGGGTTGGTGATTGGGATTCTCAAAATGCTCGTGATTTAATTCGTTATACTGCCTCTAAAGGATACAAAATCGATTCTTATGAACTTGGGAACGAGCTTTCTGCTACTGGAGTTTCGGCTAGGCTCGAGCCAGACCAATATGGTAAAGACTTGACAGTAATGGGGAAAATAGTGGAAGAAGTGTATCCTAATCCCAACAACAGACCCAAAATCTTGGGACCAGCCGGGTTCTTTGACAAAGAATGGTTCAGAGTCTTTCTTCAGAACACTGCACCAAATGTTGTGGATGGAGTCACCCACCATATTTACAATCTTGGAGCAGGTGTTGATCCTACACTTATAGATAAGGTTCAAGACCCTTATTATTTGGACCAAATTGCTCAAACATTTAAGGAAGCCAAGGAAGTTTCAGAGAGCTTTGGCGCATGGTCTAAGCCTTGGATTGGTGAATCTGGTGGTGCTTATAACAGTGGTGGCAAAACTGTTTCTCATACTTTTGCTGATGGATTTTGGTATTTGGATAATTTGGGGATGACTGCATCATTCGATCATCAGGTTTATTGTAGACAAGCCTTGATTGGTGGAAATTATGCTTTGCTTAATACCACCACTTTCATCCCTAACCCAGATTACTATAGTGCTCTACTATGGCATAGATTAATGGGAAAGAAGGTCCTGGCAGCATCCCATGACAGTTCTCCATACCTTCGTGTTTATTCACATTGCACCAGAAACGACGTAACAATCAATAAACTCAAAACCTTTTTGCAAATGTTTAAAGAAGGTGTAACTGTTCTTCTAATCAACCTGTCAAATTCGACAACGCATGATGTGAAGATTGTAAACGACAGAAACATTTACCCAAATTTCGTAGGCAAGAAATTAAAAGCAAGAGAAGAGTATCATTTGACACCCAAAGATGGCGATATTCAAAGCGATGTTATGCTTTTAAATGGAACTCCTCTTCAACTTACACCAATGTTGGAAATTCCCAAAATGAAGCCGAAGCTTGTCGATCCCACTTCCGCTGTATCGGTTGCCCCTCATTCTTACGGAAAATGCTTTGGAACTAAAAGAAAGGAAGAATTCAGAAAGAATACTTTCCTTCAGTGCAAAAGGTCAAGATATCCTAAACCTGAACACAACAGAGAAGCACAAAGCAGTAGAAGAGACGTATACTTGGCTCCACACAAATCTCCATCTTTTAGAGAGAAAAGAACGTTTGGGAACTGGTTGGGAAGACAGTTTTCACGCCAAATGAGTCGAGGGAATGAATTCTCCGACGTCGGAATGGAGCGCGCAACTGCGGTTGCAGCGGCTGCCTTTGCAATTCATTTGGTTGAAGAATCAGAATTTTCAAAACCTGTGAAGAAGATTGATCGTCCTAAATCGTCGTCATTCCCAAGGGTAAAGATTGTCGAAGAGGATAACCGTAGCCCGCCTCCACGTCCGGCACCGGAACCTGATAGGATTTTACGACCGTTATCAAATGTTGCAAAGGATCCTGAAGCAGCGACCGGCGAGAAACCGGCAGCTAAAACCGAACAACAAAAACAGAAACCAATAGGAAAGATAACCGTTCCTTCTCCACCCGTCGTGTACGACTACTCCCGCGACCGCGGAAGAACTGAAACAGAGAAACCGTTGCCAATTCCTCGCCCTCCAACTCCACCCATATCTCGAAAACAACCAACTGCTCCAATCCAAACAAGGCCTGAAGAAACCAAAGCAGATATGTGGGAAAAAGCTGAGCTTGCTAAAATCCAAGAGAGATATCAGAAGGTTAACGAGACAATTTCTTACTGGGAAACCAAGAAGAGAGAAAAAGCCATATGCAAATTTGAAGCTTCACAGGTTGAGGGAACGAAGAGAAGTCAGAGGGAAAAAGGAAGAAAAAAGTTTGAGGAAGATATGGAATTTATAAAGCAAATTGCTGGAGAAGCAAGAAGCAAAGCAGATCATAAGAAAAAGAATGAGATTCTTAAAGCTAATCGGAAAGCTGATATTATTAGACAAACAGGGGACATTCCCGTTTCTTGTTACTGCTGCTGA 2550 41.65 MATMTSKPLLLTLLCFFTISSAEFVKVSVKGVTTIAQTDDDFICATLDWWPPNKCDYGQCPWGKAGIPNLDLQNIILAEAIKEFNPLRIRVGGSLQDQIIYRVGKSYKNCPEMRKQSDGLFGFSKGCLTMQRWDELNDFFNKTSARITFGLNALKGKKPANDGTINWVGDWDSQNARDLIRYTASKGYKIDSYELGNELSATGVSARLEPDQYGKDLTVMGKIVEEVYPNPNNRPKILGPAGFFDKEWFRVFLQNTAPNVVDGVTHHIYNLGAGVDPTLIDKVQDPYYLDQIAQTFKEAKEVSESFGAWSKPWIGESGGAYNSGGKTVSHTFADGFWYLDNLGMTASFDHQVYCRQALIGGNYALLNTTTFIPNPDYYSALLWHRLMGKKVLAASHDSSPYLRVYSHCTRNDVTINKLKTFLQMFKEGVTVLLINLSNSTTHDVKIVNDRNIYPNFVGKKLKAREEYHLTPKDGDIQSDVMLLNGTPLQLTPMLEIPKMKPKLVDPTSAVSVAPHSYGKCFGTKRKEEFRKNTFLQCKRSRYPKPEHNREAQSSRRDVYLAPHKSPSFREKRTFGNWLGRQFSRQMSRGNEFSDVGMERATAVAAAAFAIHLVEESEFSKPVKKIDRPKSSSFPRVKIVEEDNRSPPPRPAPEPDRILRPLSNVAKDPEAATGEKPAAKTEQQKQKPIGKITVPSPPVVYDYSRDRGRTETEKPLPIPRPPTPPISRKQPTAPIQTRPEETKADMWEKAELAKIQERYQKVNETISYWETKKREKAICKFEASQVEGTKRSQREKGRKKFEEDMEFIKQIAGEARSKADHKKKNEILKANRKADIIRQTGDIPVSCYCC* 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26637691 26642035 - CsaV3_5G033170.1 Csa05g02498 530885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02498 849 Gene3D Glycosidases 65 385 - -
Csa05g02498 849 MobiDBLite consensus disorder prediction 714 728 - -
Csa05g02498 849 PANTHER HEPARANASE-RELATED 14 517 - -
Csa05g02498 849 MobiDBLite consensus disorder prediction 619 743 - -
Csa05g02498 849 Pfam Remorin, C-terminal region 740 844 IPR005516 -
Csa05g02498 849 SUPERFAMILY (Trans)glycosidases 38 387 IPR017853 -
Csa05g02498 849 Pfam Glycosyl hydrolase family 79, N-terminal domain 25 343 IPR005199 GO:0016020|GO:0016798
Csa05g02498 849 MobiDBLite consensus disorder prediction 619 649 - -
Csa05g02498 849 PANTHER OS07G0598400 PROTEIN 14 517 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00233 Csa-Chr2:1583691 Csa05g02498 Csa-Chr5:26637691 9.94E-164 dispersed
Csa05g01539 Csa-Chr5:17970201 Csa05g02498 Csa-Chr5:26637691 1.20E-153 dispersed
Csa05g02498 Csa-Chr5:26637691 Csa06g03819 Csa-Chr6:30287962 4.09E-06 dispersed
Csa01g00580 Csa-Chr1:3722835 Csa05g02498 Csa-Chr5:26637691 1.63E-14 transposed
Csa01g00579 Csa-Chr1:3715813 Csa05g02498 Csa-Chr5:26637691 0 wgd
Csa01g00271 Csa-Chr1:1707643 Csa05g02498 Csa-Chr5:26637691 1.82E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02498 K07964 - csv:101214214 1035.02