Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02504 ATGAGAAGCTCCTGGGTTAATAAAATATCTGTAATCTTAGGCTCCAAACCACCATTCAGCTGGTTAATTTTATGCCTCATCAGCGTGCTTGCGTTAATTGCAGTGCTAGGTACGTCTACTTCAAATGCCTTTGACTCAGTTACAACCACGCCAGTGTCTGACATTTATGCTAGTTATAGAAGGCAAAAAGAAAGGGCAGCAATTGATTTGTTTGACTTAAAGTCTCTTTCATTAGCCACTACACGGCTGAAAGAGTTTGGGCTTTGTGGAAAAGAAAGAGAAAACCATGTACCATGTTACAATGTTACAGCAAACCTGTTAGCTGGATACAAAGAAGGGGAGGAGTATGATAGGCACTGTGAAGTATCTAGAACAGCACAGCGGTGCCTAGTTCGTCCTCCTAAAGACTACAAGATCCCTCTGAGCTGGCCTGTTGGTAGGGATATAATATGGAGTGGAAATGTGAAGGTTACAAGAGATCAACTTCTGTCTTCTGGGAGCCCTACCAAAAGGTTGATGTTGTTAGAAGAGAACCAAATAGCTTTCCACTCAGAGGATGGAGATGGAGTTAAAGAGTATTCTTTTCAAATTGCAGAGATGATTGGTTTAGGCAGCGACTCTGAATTTTTTCAGGCTGGTGTACGCTCGATCCTTGATATCGGTTGTGGGTTTGGTAGCTTGGGTGCTCATTTAATATCATTGAATGTAATGGTTATGTGCATTGCAACCTATGAGGCGACTGGCAGCCAAGTCCAAATGGCTCTCGAGAGAGGCCTTCCCGCGATGCTTGGAAACTTTGTTACAAAACAGCTCCCATATCCATCCTTGTCATTTGACATGGTTCACTGTGCACAATGTGATATCTCCTGGAACGATAAAGCAAGCAGGAAGTTGTACCACTTTGTAAAGAAGCACACGATACTCCATCATATTATCAACCTCTGGTACCATGCATAA 957 42.74 MRSSWVNKISVILGSKPPFSWLILCLISVLALIAVLGTSTSNAFDSVTTTPVSDIYASYRRQKERAAIDLFDLKSLSLATTRLKEFGLCGKERENHVPCYNVTANLLAGYKEGEEYDRHCEVSRTAQRCLVRPPKDYKIPLSWPVGRDIIWSGNVKVTRDQLLSSGSPTKRLMLLEENQIAFHSEDGDGVKEYSFQIAEMIGLGSDSEFFQAGVRSILDIGCGFGSLGAHLISLNVMVMCIATYEATGSQVQMALERGLPAMLGNFVTKQLPYPSLSFDMVHCAQCDISWNDKASRKLYHFVKKHTILHHIINLWYHA* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26670609 26672677 + CsaV3_5G033230.1 Csa05g02504 530891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02504 318 Gene3D Vaccinia Virus protein VP39 192 315 IPR029063 -
Csa05g02504 318 PANTHER METHYLTRANSFERASE PMT4-RELATED 1 295 - -
Csa05g02504 318 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 296 IPR029063 -
Csa05g02504 318 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 1 295 IPR004159 GO:0008168
Csa05g02504 318 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 95 297 IPR004159 GO:0008168
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02504 Csa-Chr5:26670609 Csa03g04449 Csa-Chr3:38802380 8.02E-95 dispersed
Csa05g02504 Csa-Chr5:26670609 Csa05g00741 Csa-Chr5:5067866 5.71E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02504 K23870 - csv:101213009 592.423