Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02504 ATGAGAAGCTCCTGGGTTAATAAAATATCTGTAATCTTAGGCTCCAAACCACCATTCAGCTGGTTAATTTTATGCCTCATCAGCGTGCTTGCGTTAATTGCAGTGCTAGGTACGTCTACTTCAAATGCCTTTGACTCAGTTACAACCACGCCAGTGTCTGACATTTATGCTAGTTATAGAAGGCAAAAAGAAAGGGCAGCAATTGATTTGTTTGACTTAAAGTCTCTTTCATTAGCCACTACACGGCTGAAAGAGTTTGGGCTTTGTGGAAAAGAAAGAGAAAACCATGTACCATGTTACAATGTTACAGCAAACCTGTTAGCTGGATACAAAGAAGGGGAGGAGTATGATAGGCACTGTGAAGTATCTAGAACAGCACAGCGGTGCCTAGTTCGTCCTCCTAAAGACTACAAGATCCCTCTGAGCTGGCCTGTTGGTAGGGATATAATATGGAGTGGAAATGTGAAGGTTACAAGAGATCAACTTCTGTCTTCTGGGAGCCCTACCAAAAGGTTGATGTTGTTAGAAGAGAACCAAATAGCTTTCCACTCAGAGGATGGAGATGGAGTTAAAGAGTATTCTTTTCAAATTGCAGAGATGATTGGTTTAGGCAGCGACTCTGAATTTTTTCAGGCTGGTGTACGCTCGATCCTTGATATCGGTTGTGGGTTTGGTAGCTTGGGTGCTCATTTAATATCATTGAATGTAATGGTTATGTGCATTGCAACCTATGAGGCGACTGGCAGCCAAGTCCAAATGGCTCTCGAGAGAGGCCTTCCCGCGATGCTTGGAAACTTTGTTACAAAACAGCTCCCATATCCATCCTTGTCATTTGACATGGTTCACTGTGCACAATGTGATATCTCCTGGAACGATAAAGCAAGCAGGAAGTTGTACCACTTTGTAAAGAAGCACACGATACTCCATCATATTATCAACCTCTGGTACCATGCATAA 957 42.74 MRSSWVNKISVILGSKPPFSWLILCLISVLALIAVLGTSTSNAFDSVTTTPVSDIYASYRRQKERAAIDLFDLKSLSLATTRLKEFGLCGKERENHVPCYNVTANLLAGYKEGEEYDRHCEVSRTAQRCLVRPPKDYKIPLSWPVGRDIIWSGNVKVTRDQLLSSGSPTKRLMLLEENQIAFHSEDGDGVKEYSFQIAEMIGLGSDSEFFQAGVRSILDIGCGFGSLGAHLISLNVMVMCIATYEATGSQVQMALERGLPAMLGNFVTKQLPYPSLSFDMVHCAQCDISWNDKASRKLYHFVKKHTILHHIINLWYHA* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26670609 26672677 + CsaV3_5G033230.1 Csa05g02504 530891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02504 318 Gene3D Vaccinia Virus protein VP39 192 315 IPR029063 -
Csa05g02504 318 PANTHER METHYLTRANSFERASE PMT4-RELATED 1 295 - -
Csa05g02504 318 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 296 IPR029063 -
Csa05g02504 318 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 1 295 IPR004159 GO:0008168
Csa05g02504 318 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 95 297 IPR004159 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02504 K23870 QUA2, TSD2; putative pectin methyltransferase [EC:2.1.1.-] - csv:101213009 592.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02504 Csa-Chr5:26670609 Csa03g04449 Csa-Chr3:38802380 8.02E-95 dispersed
Csa05g02504 Csa-Chr5:26670609 Csa05g00741 Csa-Chr5:5067866 5.71E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g67 . . . . . . . . . . . . . . . . . Bhi07g01504 . . Lac13g0368 Hepe10g1789 . . . . . . . . . . . . . . Csa05g02504 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004930 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41