Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa05g02505 | ATGTCTATATCTACAGGCGTTCAATCAGAAGACTACTCTGATGAACTACAAATTTGGCAATCTGCTTTGAAAAACTATTGGTCCTTACTTACACCTCTAATTTTCTCTGACCATCCAAAGAGGCCTGGTGATGAAGATCCATTGCCTCCATTTAACATGATACGCAATGTGATGGACATGAATGCCCACTATGGGGGTTTAAATGCTGCGTTTGTGGAGCAGAAGAAAACAGTTTGGGTCATGAATGTTGTACCTGTTGGGTCGCCCAATACACTTCCGCTCATACTTGATCAAGGTTTTGCTGGTGTTCTGCACGATTGTTTTAATCTGGTTTTTCCTCACCCAATAAATGTACGAGCACTTAAAACAGGACTGAACCTCTCGTCTAATTGTAGGTGTGAACCTTTCCCCACTTATCCACGAACATATGATTTGCTCCATGCAAATGGGCTCCTTTCACAGCTACTTTCAAGTAGGTGCAGCATGATTGGATTATTAGTGGAGATGGATCGTATACTGCGTCCTGAGGGTTGGGTTGTCTTTAAGGACAAAGTGGGACCGATAGAGAAAGTGCGAATGCTCGCTACACAGATTCGTTGGGAAGCAAGGGTGATTGACTTTCAGAATGGCAGTGACCAGAGGCTCCTTGTTTGCCAAAAACCATTCGTGAAAAAATGA | 678 | 43.22 | MSISTGVQSEDYSDELQIWQSALKNYWSLLTPLIFSDHPKRPGDEDPLPPFNMIRNVMDMNAHYGGLNAAFVEQKKTVWVMNVVPVGSPNTLPLILDQGFAGVLHDCFNLVFPHPINVRALKTGLNLSSNCRCEPFPTYPRTYDLLHANGLLSQLLSSRCSMIGLLVEMDRILRPEGWVVFKDKVGPIEKVRMLATQIRWEARVIDFQNGSDQRLLVCQKPFVKK* | 226 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 26672739 | 26674074 | + | CsaV3_5G033240.1 | Csa05g02505 | 530892 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa05g02505 | 225 | Pfam | Putative S-adenosyl-L-methionine-dependent methyltransferase | 6 | 106 | IPR004159 | GO:0008168 | |
| Csa05g02505 | 225 | Pfam | Putative S-adenosyl-L-methionine-dependent methyltransferase | 132 | 220 | IPR004159 | GO:0008168 | |
| Csa05g02505 | 225 | PANTHER | METHYLTRANSFERASE PMT4-RELATED | 8 | 224 | - | - | |
| Csa05g02505 | 225 | PANTHER | SAM-DEPENDENT METHYLTRANSFERASE | 8 | 224 | IPR004159 | GO:0008168 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa05g02505 | Csa-Chr5:26672739 | Csa03g04449 | Csa-Chr3:38802380 | 1.70E-83 | dispersed | |
| Csa05g02505 | Csa-Chr5:26672739 | Csa05g00741 | Csa-Chr5:5067866 | 1.52E-36 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa05g02505 | K23870 | - | csv:101213009 | 389.808 |