Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02506 ATGTCGTCTGCCGAGAGGGAAAGAGAGACGCAGGTCTACATGGCCAAGCTTGCTGAACAGGCCGAACGCTACGATGAAATGGTGGAGTGTATGAAGAAAGTGGCTAAACTAGATGTTGAGCTAACAGTGGAAGAGAGAAACTTGCTTTCTGTTGGATACAAAAATGTTATAGGTGCTAGGCGAGCTTCTTGGCGCATCATGTCCTCAATCGAACAGAAGGAAGAGTCCAAAAGCAATGAGAATAATGTTAAACTCATTAAGAGTTACCGTCAGAAGGTAGAGGAGGAGCTTTCCAAGATCTGTATCGATATTCTGACTATTATTGACAAGCACCTCATCCCTTCTTCAACCTCTTCCGAAGCATCGGTTTTTTACTACAAGATGAAAGGTGATTATTACCGATATCTTGCTGAATTCAAAACAGATCAAGAAAGAAAGGAGGCAGCTGACCAGTCATTGAAGGGATATGAGACTGCTGCGAGCACCGCAAATACCGAACTCCCATCGACCCACCCAATCCGTCTTGGCCTTGCTCTCAACTTTTCTGTCTTCTACTATGAGATTATGAATTCCCCTGAAAGGGCTTGCCACCTAGCTAAACAAGCTTTTGACGAGGCAATTGCTGAGTTGGATACTTTGAGTGAGGAATCATACAAGGACAGTACCCTCATAATGCAGTTGCTGAGAGATAACCTCACTCTCTGGACATCTGATTTACCAGAAGATGGAGGTGAAGATAACGTCAAAGGTGAGGATTCGAAACCTGCAGCACCAGCACCAGCACCAGCCCTAGCCCCTGAGAAGCATTAA 810 45.06 MSSAERERETQVYMAKLAEQAERYDEMVECMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKSNENNVKLIKSYRQKVEEELSKICIDILTIIDKHLIPSSTSSEASVFYYKMKGDYYRYLAEFKTDQERKEAADQSLKGYETAASTANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEDNVKGEDSKPAAPAPAPALAPEKH* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26677086 26681017 + CsaV3_5G033250.1 Csa05g02506 530893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02506 269 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
Csa05g02506 269 PANTHER 14-3-3 PROTEIN 4 256 IPR000308 -
Csa05g02506 269 PANTHER BNAC03G57490D PROTEIN 4 256 - -
Csa05g02506 269 SUPERFAMILY 14-3-3 protein 7 238 IPR036815 -
Csa05g02506 269 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Csa05g02506 269 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Csa05g02506 269 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
Csa05g02506 269 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
Csa05g02506 269 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
Csa05g02506 269 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
Csa05g02506 269 MobiDBLite consensus disorder prediction 237 269 - -
Csa05g02506 269 Coils Coil 196 216 - -
Csa05g02506 269 SMART 1433_4 8 250 IPR023410 -
Csa05g02506 269 Coils Coil 14 34 - -
Csa05g02506 269 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
Csa05g02506 269 PIRSF 14-3-3 2 248 IPR000308 -
Csa05g02506 269 Pfam 14-3-3 protein 14 236 IPR023410 -
Csa05g02506 269 Gene3D - 1 249 IPR036815 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02163 Csa-Chr2:19525778 Csa05g02506 Csa-Chr5:26677086 4.28E-129 dispersed
Csa04g00880 Csa-Chr4:6317654 Csa05g02506 Csa-Chr5:26677086 1.68E-130 dispersed
Csa05g02506 Csa-Chr5:26677086 Csa06g02080 Csa-Chr6:18583648 2.39E-177 dispersed
Csa05g02506 Csa-Chr5:26677086 Csa02g02151 Csa-Chr2:19444483 8.96E-148 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02506 - K06630 csv:101221275 482.641