Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g02506 | ATGTCGTCTGCCGAGAGGGAAAGAGAGACGCAGGTCTACATGGCCAAGCTTGCTGAACAGGCCGAACGCTACGATGAAATGGTGGAGTGTATGAAGAAAGTGGCTAAACTAGATGTTGAGCTAACAGTGGAAGAGAGAAACTTGCTTTCTGTTGGATACAAAAATGTTATAGGTGCTAGGCGAGCTTCTTGGCGCATCATGTCCTCAATCGAACAGAAGGAAGAGTCCAAAAGCAATGAGAATAATGTTAAACTCATTAAGAGTTACCGTCAGAAGGTAGAGGAGGAGCTTTCCAAGATCTGTATCGATATTCTGACTATTATTGACAAGCACCTCATCCCTTCTTCAACCTCTTCCGAAGCATCGGTTTTTTACTACAAGATGAAAGGTGATTATTACCGATATCTTGCTGAATTCAAAACAGATCAAGAAAGAAAGGAGGCAGCTGACCAGTCATTGAAGGGATATGAGACTGCTGCGAGCACCGCAAATACCGAACTCCCATCGACCCACCCAATCCGTCTTGGCCTTGCTCTCAACTTTTCTGTCTTCTACTATGAGATTATGAATTCCCCTGAAAGGGCTTGCCACCTAGCTAAACAAGCTTTTGACGAGGCAATTGCTGAGTTGGATACTTTGAGTGAGGAATCATACAAGGACAGTACCCTCATAATGCAGTTGCTGAGAGATAACCTCACTCTCTGGACATCTGATTTACCAGAAGATGGAGGTGAAGATAACGTCAAAGGTGAGGATTCGAAACCTGCAGCACCAGCACCAGCACCAGCCCTAGCCCCTGAGAAGCATTAA | 810 | 45.06 | MSSAERERETQVYMAKLAEQAERYDEMVECMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKSNENNVKLIKSYRQKVEEELSKICIDILTIIDKHLIPSSTSSEASVFYYKMKGDYYRYLAEFKTDQERKEAADQSLKGYETAASTANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEDNVKGEDSKPAAPAPAPALAPEKH* | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 26677086 | 26681017 | + | CsaV3_5G033250.1 | Csa05g02506 | 530893 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g02506 | 269 | ProSitePatterns | 14-3-3 proteins signature 2. | 218 | 237 | IPR023409 | - | |
Csa05g02506 | 269 | PANTHER | 14-3-3 PROTEIN | 4 | 256 | IPR000308 | - | |
Csa05g02506 | 269 | PANTHER | BNAC03G57490D PROTEIN | 4 | 256 | - | - | |
Csa05g02506 | 269 | SUPERFAMILY | 14-3-3 protein | 7 | 238 | IPR036815 | - | |
Csa05g02506 | 269 | PRINTS | 14-3-3 protein zeta signature | 40 | 69 | IPR000308 | - | |
Csa05g02506 | 269 | PRINTS | 14-3-3 protein zeta signature | 89 | 113 | IPR000308 | - | |
Csa05g02506 | 269 | PRINTS | 14-3-3 protein zeta signature | 120 | 142 | IPR000308 | - | |
Csa05g02506 | 269 | PRINTS | 14-3-3 protein zeta signature | 155 | 181 | IPR000308 | - | |
Csa05g02506 | 269 | PRINTS | 14-3-3 protein zeta signature | 182 | 208 | IPR000308 | - | |
Csa05g02506 | 269 | PRINTS | 14-3-3 protein zeta signature | 209 | 238 | IPR000308 | - | |
Csa05g02506 | 269 | MobiDBLite | consensus disorder prediction | 237 | 269 | - | - | |
Csa05g02506 | 269 | Coils | Coil | 196 | 216 | - | - | |
Csa05g02506 | 269 | SMART | 1433_4 | 8 | 250 | IPR023410 | - | |
Csa05g02506 | 269 | Coils | Coil | 14 | 34 | - | - | |
Csa05g02506 | 269 | ProSitePatterns | 14-3-3 proteins signature 1. | 46 | 56 | IPR023409 | - | |
Csa05g02506 | 269 | PIRSF | 14-3-3 | 2 | 248 | IPR000308 | - | |
Csa05g02506 | 269 | Pfam | 14-3-3 protein | 14 | 236 | IPR023410 | - | |
Csa05g02506 | 269 | Gene3D | - | 1 | 249 | IPR036815 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02163 | Csa-Chr2:19525778 | Csa05g02506 | Csa-Chr5:26677086 | 4.28E-129 | dispersed | |
Csa04g00880 | Csa-Chr4:6317654 | Csa05g02506 | Csa-Chr5:26677086 | 1.68E-130 | dispersed | |
Csa05g02506 | Csa-Chr5:26677086 | Csa06g02080 | Csa-Chr6:18583648 | 2.39E-177 | dispersed | |
Csa05g02506 | Csa-Chr5:26677086 | Csa02g02151 | Csa-Chr2:19444483 | 8.96E-148 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g02506 | - | K06630 | csv:101221275 | 482.641 |