Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02508 ATGGCTTCCATCTCAAACATTATTCACTCTCCAATTCATTCACATCGGTTACCTTCCTTTCGCTTGTTTCCCAATAGAACATTTCCCGCCAACTCTTTTGTTCTCAAACGTCGATCACTTGCTTCGCCTTTGAGCTCCCCGTTGACGGAGAATCCAACTGTTTCGCCGTCGGTGGAACTATCTCACAAGGCTATTGGCCTTTTAAGTTCTAGACAACCTTTAAAGTCTCGAAGTGTTGTTCGTTTGCCGGTGGTGAAGGCGGCTGCAGCTGATGCTGATGGAGCTTCCGATGGGTTGACTAGCTCTTCGGAGAGCTTTGGTGCAAGATTTCCAGCACTTATTACTGGGTTCTACTTCTTTATGTGGTACTTTTTAAATGTTATTTTCAACATACTCAACAAAAAAGTTTACAATTATTTTCCATATCCATACTTTGTCTCTGTCATACATCTTCTTGTTGGAGTTGTATACTGTCTCGTTTCTTGGGCTGTAGGTCTGCCAAAACGTGCCCCGATCGATAAGGACCTCTTGCTATTATTGACTCCAGTTTCGCTATGTCATGCACTTGGACATGTGATGTCAAATGTTTCGTTTGCAGCTGTTGCTGTGTCCTTCACTCACACCATTAAAGCTCTGGAGCCATTCTTTAACGCTGCTGCTTCTCAATTCATTTTGGGACATCAAATTCCCTTCAGCTTGTGGCTTTCTCTAGCACCTGTTGTTCTAGGTGTGTCAATGGCATCACTAACGGAACTTTCTTTCAATTGGATCGGCTTTGTTAGTGCAATGATTTCAAACATTGCATTTACCTATAGAAGTATATATTCGAAGAAAGCCATGACAGGAATGGACAGTACAAACGTGTATGCATACACCTCAATAATTGCTCTTTTGTTTTGCATTCCTCCCGCAGTAATGATTGAGGGACCGCAATTGCTGCAGCATGGTTTTAAGGATGCCATTGCCAAAGTGGGTTTACATAAGTTCCTGTCTGATCTTTTCTGGATCGGCATGTTTTATCATTTATACAATCAGCTTGCCGCTAACACTCTCGAACGTGTTGCACCATTAACGCATGCTGTAGGAAACGTATTGAAGCGAGTTTTCGTGATTGGATTCTCCATTGTTGTTTTCGGCAACAAGATCTCAACTCAAACTGGAATCGGTACTGCTATAGCAATTGCCGGTGTCGCCATCTACTCCTTGATTAAAGCAAACTTGGAGGAGCAAAAACGGAGAGCTGCAAAAATTCCATCATCATAA 1263 42.52 MASISNIIHSPIHSHRLPSFRLFPNRTFPANSFVLKRRSLASPLSSPLTENPTVSPSVELSHKAIGLLSSRQPLKSRSVVRLPVVKAAAADADGASDGLTSSSESFGARFPALITGFYFFMWYFLNVIFNILNKKVYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDKDLLLLLTPVSLCHALGHVMSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGHQIPFSLWLSLAPVVLGVSMASLTELSFNWIGFVSAMISNIAFTYRSIYSKKAMTGMDSTNVYAYTSIIALLFCIPPAVMIEGPQLLQHGFKDAIAKVGLHKFLSDLFWIGMFYHLYNQLAANTLERVAPLTHAVGNVLKRVFVIGFSIVVFGNKISTQTGIGTAIAIAGVAIYSLIKANLEEQKRRAAKIPSS* 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26685270 26689585 + CsaV3_5G033270.1 Csa05g02508 530895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02508 420 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 113 411 IPR004696 GO:0016021|GO:0022857|GO:0055085
Csa05g02508 420 Pfam Triose-phosphate Transporter family 115 401 IPR004853 -
Csa05g02508 420 PANTHER SOLUTE CARRIER FAMILY 35 54 409 - -
Csa05g02508 420 PANTHER TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLASTIC-LIKE ISOFORM X1 54 409 - -
Csa05g02508 420 SUPERFAMILY Multidrug resistance efflux transporter EmrE 295 402 - -
Csa05g02508 420 SUPERFAMILY Multidrug resistance efflux transporter EmrE 157 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00529 Csa-Chr3:4405822 Csa05g02508 Csa-Chr5:26685270 1.06E-77 dispersed
Csa05g01908 Csa-Chr5:22240296 Csa05g02508 Csa-Chr5:26685270 1.48E-64 dispersed
Csa05g02508 Csa-Chr5:26685270 Csa04g01806 Csa-Chr4:17700350 5.20E-21 dispersed
Csa05g02508 Csa-Chr5:26685270 Csa06g03531 Csa-Chr6:28754571 2.86E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02508 K15283 - csv:101221040 781.171