Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02516 ATGGGGGAAGCAAACCAAGGAGGAAGTAGAGGAATGGAGAAAGTTTCTCTACAAACTGAAAAGTACCCAACAGATCTGTTGCAGAGATTCTTATGTAGTAATTCACATCAGACCCAAATTGGGAGAGCCTTTAATGAAGAAGAAGAAGAAGATACAGAGGAGATTGAGCTTAATCTTGGGCTTTCACTTGGGGGTCGTTTTGGGGTTGACAAAAATTCCAAGAAGCTTATTCGGTCATCTTCCATAGCTGGTACCATGCTTTTGAGGGACGATGATGCTTCTACTCCTGCTGCTGTGTCGTACCCGGCGGCGATTATTCGGACCTCGTCTCTTCCGCCGGAGACAGAGGAGGAGTGGAGGAAGAGGAAAGAGTTGCAGACGTTGAGGCGAATGGAGGCCAAAAGGAGGCGGTTTGAGAAGCAGAGGAATAAGGATGGGATTGGGATGGGGATGGGGACTAGTGGGTGTTTTGAAGAAGAGAGGCGTGAAATTGAAGGTCTTACAGGATTGAATTTGAGAGAGAAAAGGCATGGTTCCTGTATTTCGACGACTGTGGCACCGCCATTTGGGTTACCGACGTGGGCTGCTGCTGCTCGACAGGCTCTTACTGGCGGAATTGTGGATGAGATTGGCAAAGGCAAAGGTGGCTGTACATCCGGTGGCGGCGGCGGCACTAACGGCGGAGGTTTTCAGGGTGTCGGGCAGCCCGCCTCTCAGTGCTCTGCCGAATCACAGGGCGGAAGCTCATCGGGGATGTCGGAACTAGATAGCAAACAGATCCAAGGATCTAGCAGTTACGGTGAAGCGAGGAGCTCCTCACAAGAGCGAGGCAACCTAGAGGCTGCAGGTTCTTCAGGATCAAAGATGTGTGAGAACCCATCTGCCAGTTACAAAACAGAGACGAAAAATCAATCCAAGAAACCTGATTCAGGCGAGAACAAGGGAAGGGAAGCGGGAACGATGTCAATGGAAGACATGCCTTGTGTGTTCACGATAGGGGATGGGCCAGATGGGAGAAGAGTGGAAGGAATTCTTTACAAGTATGGAAAAGGGGAGGAAGTGAGGATAATGTGTGTTTGCCATGGGAAATTTCTGTCACCAGCTGAGTTTGTGAAGCATGCTGGTGGAAAAAATGTGGCTCATCCCTTAAGACATATAGTTGTCAATCCCAATTCTGGTCCTTTTTTGTGA 1191 49.29 MGEANQGGSRGMEKVSLQTEKYPTDLLQRFLCSNSHQTQIGRAFNEEEEEDTEEIELNLGLSLGGRFGVDKNSKKLIRSSSIAGTMLLRDDDASTPAAVSYPAAIIRTSSLPPETEEEWRKRKELQTLRRMEAKRRRFEKQRNKDGIGMGMGTSGCFEEERREIEGLTGLNLREKRHGSCISTTVAPPFGLPTWAAAARQALTGGIVDEIGKGKGGCTSGGGGGTNGGGFQGVGQPASQCSAESQGGSSSGMSELDSKQIQGSSSYGEARSSSQERGNLEAAGSSGSKMCENPSASYKTETKNQSKKPDSGENKGREAGTMSMEDMPCVFTIGDGPDGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGPFL* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26716591 26720165 - CsaV3_5G033350.1 Csa05g02516 530903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02516 396 MobiDBLite consensus disorder prediction 227 322 - -
Csa05g02516 396 Pfam Ethylene-responsive binding factor-associated repression 50 84 IPR012463 -
Csa05g02516 396 PANTHER AFP HOMOLOG 2 19 392 IPR031307 GO:0007165
Csa05g02516 396 MobiDBLite consensus disorder prediction 231 301 - -
Csa05g02516 396 Pfam Tify domain binding domain 354 388 IPR032308 -
Csa05g02516 396 PANTHER NINJA-FAMILY PROTEIN AFP1 19 392 - -
Csa05g02516 396 Pfam Putative nuclear localisation signal 106 224 IPR032310 -
Csa05g02516 396 Coils Coil 121 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02702 Csa-Chr3:25828341 Csa05g02516 Csa-Chr5:26716591 1.42E-20 transposed
Csa06g01637 Csa-Chr6:14362884 Csa05g02516 Csa-Chr5:26716591 8.78E-12 transposed
Csa01g00602 Csa-Chr1:3867108 Csa05g02516 Csa-Chr5:26716591 3.63E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02516 - - csv:101220339 727.628