Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02517 ATGTGTGGAATCGCTTTGATCGTTTCGGGCATTCGCCTTCATTTATCTTCTCTACATGTAGACGCCACATCCCCGTCTCCTTCTCCAGTTCACGAGCAACTCGAGTTTTCAATTGATGATCTTAAAGCAGTATTACGGAGAAGAGGGCCCGATAGCTTAGGGGGAGTGAAGGTTTTTTTCTCTTTAAAATCTTCTAATCCCAGTGGAGAAGAGCAGCTTGAGTGTTTCATTGAAAGGGTTGATGATGGCGTAGCATTCCAAAATCAAAATGATCAATACGAGATGGAAAATGGATCTATTCTCCAATCAGAGAACGGTTGCAGTAATCCCATCTCTGGTGCGGAGCTTTATTTACTTGGGGCCACGTTACAACTTAGAGGTGTTAACTCTATTGTTCAGCCGCTGATGGATGCTTCCCGCAATATTCTTGTTTACAATGGTGAAATATTTGGAGGACTACATGTTGAGTGTCATGAAAACGATGCCGAAAGTCTTATGCTAGCACTTTGGAATTGTTGCTCATGTAATTTTAGTTTAGATATGAACACATGTGAAGATGAATTTAGGAGAGAAAGAACTATTGTGGATATTCTTTCAAAGATCCAAGGGCCATGGTCAATCGTCTACTGGCAGGATAGTGCAAAAACTTTGTGGTTTGGTCGGGATGCCTTTGGTAGGCGAAGTCTTCTTGTTCACTGGCCAACAGTGGAGGATTCTCGGTTTCTGTTGTCGTCTGTATCACCAGCTTCTTCCATGTTTCAAGACTCTGGGCTTGAAGTTGACAGTGGTACTTGTGAAGTGAGCTTCTGGGAAGAACTACCATGTGGGATTTACAGTGTCTCTTTTGATGCTCAGAAAACTGATGGTTGCGTGGTTGGTGAAGTCAAAAGGCATGAATGGACCAATGAGTTACTGAAAGAGCTTGTTGAGTGGAAAAGAACTCGTATTGTACCTGAACATGGAGACATCTCCACTCCATATCACAAGGATTGTTTGTCACAACATGAAAGCCATTCTACATGTTTACATAACTTGCAATCAGCATCGGGGAATTTCCAAGCTCCTGTCTCAACACCTGCAGAGATTCTACTGGATGCTCTAAGGAAGTCTCTAATCCGGCGGACTTCACTTTATACAATTTTCCAGGGTACTATGTCTGCTTCCAGAAAAGCAGAACTTGGTCCAGTGGCCATTCTTTTTTCTGGTGGGTTGGATTCTATGATTCTAGCAGCATTACTGGATGAATGTCTCGATCCTTGTTATGAGGTGGATCTTCTTAATGTCAGCTTTGATGGATGTTCTGCACCTGATCGCATCTCTGCGAAGGCTGGTGTTAAGGAACTGAGTAGAATTGCCCCTCTAAGAAGGTGGAAGCTGGTTGAGATTGATGCTGATATGTCAGATTTGACCTCTGAAACCAAGCACGTCATGTCTCTAATAAATCCTGCAAATACATACATGGACCTAAATATTGGAATAGCTTTGTGGCTGGCCTCTGGTGGCAATGGTTGGATTTATGAATCAGCTGATGAGGATGAGAAGTTCCATCAACGTGTAAAATACAAGTCCGAGGCCAAGATTCTCCTTGTTGGTTCTGGTGCCGATGAGCAATGTGCTGGCTATGGCAGGCATCGAACAAAATATAGACAAGGGGGTTGGAATCTTTTAAATGAGGAAATGAAGTTGGATATCCAGAGAATCTGGAAGAGAAATCTAGGGAGAGATGACAGATGTATTGCAGATAATGGGAAGGAGGCTAGATTTCCCTTTTTGGATGAAGACGTTATACGTACATTGCTAGCATTTCCTCTATGGGAGGTTACTGACCTTGAGAAACCTGCTGGAACCGGTGACAAGAAGATACTTAGGGAGGTTGCAAAATTACTTGGCCTGCACGAAGCAGGGGTTCTACCTAAAAGAGCAATACAGTTTGGCTCAAGGATTGCAAGGGAATCAAACCGCAAGAACTTCGGAAGCAACCGGGCTGCTAATCAGGCCTCCGCCGGAAGTGTGAAGTTCAACAAACAATCTGTACTTCGGTGA 2043 43.51 MCGIALIVSGIRLHLSSLHVDATSPSPSPVHEQLEFSIDDLKAVLRRRGPDSLGGVKVFFSLKSSNPSGEEQLECFIERVDDGVAFQNQNDQYEMENGSILQSENGCSNPISGAELYLLGATLQLRGVNSIVQPLMDASRNILVYNGEIFGGLHVECHENDAESLMLALWNCCSCNFSLDMNTCEDEFRRERTIVDILSKIQGPWSIVYWQDSAKTLWFGRDAFGRRSLLVHWPTVEDSRFLLSSVSPASSMFQDSGLEVDSGTCEVSFWEELPCGIYSVSFDAQKTDGCVVGEVKRHEWTNELLKELVEWKRTRIVPEHGDISTPYHKDCLSQHESHSTCLHNLQSASGNFQAPVSTPAEILLDALRKSLIRRTSLYTIFQGTMSASRKAELGPVAILFSGGLDSMILAALLDECLDPCYEVDLLNVSFDGCSAPDRISAKAGVKELSRIAPLRRWKLVEIDADMSDLTSETKHVMSLINPANTYMDLNIGIALWLASGGNGWIYESADEDEKFHQRVKYKSEAKILLVGSGADEQCAGYGRHRTKYRQGGWNLLNEEMKLDIQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIRTLLAFPLWEVTDLEKPAGTGDKKILREVAKLLGLHEAGVLPKRAIQFGSRIARESNRKNFGSNRAANQASAGSVKFNKQSVLR* 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26725050 26730675 + CsaV3_5G033360.1 Csa05g02517 530904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02517 680 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 42 264 IPR029055 -
Csa05g02517 680 Gene3D HUPs 357 677 IPR014729 -
Csa05g02517 680 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 28 267 IPR029055 -
Csa05g02517 680 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 390 650 - -
Csa05g02517 680 CDD Asn_Synthase_B_C 394 645 IPR001962 GO:0004066|GO:0006529
Csa05g02517 680 Pfam Asparagine synthase 517 629 IPR001962 GO:0004066|GO:0006529
Csa05g02517 680 PANTHER ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 1 665 - -
Csa05g02517 680 Pfam Glutamine amidotransferase domain 132 245 IPR017932 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02517 - - - csv:101211806 1376.3
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g30 . . . . . Bpe10g00901 . Bma15g00130 Cmo04g01790 . . . . . Sed06g1781 . Cpe01g01509 Bhi07g01483 Tan04g0990 Cmetu10g1518 Lac13g0381 Hepe10g1800 . . Cla05g02389 . . Cco05g2636 Clacu05g2563 Cmu05g2420 Cre05g2537 Cone13ag0903 Cone19ag0900 . . Lsi04g00360 Csa05g02517 Chy10g01061 Cme10g00354 Blo06g00929 . . . . . . . . . . Cma04g01705 . Car04g01740 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007690 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 3 2 1 35