Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02520 ATGGCTCTATGTGGGGATCATGAAGATAGAGAAGTGAGGATCCATGAAAGTTTGGAGGAGCTAAGTACTGATTTAGCTGACTATATTGCTGAATTATCAGAGGCATCTGTGAAAGAACGTGGGGTGTTTTCTATCGCGTTATCTGGTGGTTCTCTGATTAGCTTACTGGGAAAGCTCTGTGAAGCTCCTTATAACAAGACTGTCGACTGGGCCAAGTGGTATATATTTTGGGCTGATGAACGTGTTGTTGCAAAAAGCCATGCCGACAGCAATTATAAGCTTGCAAAGGATAACCTTCTTTCCAAGGTCCCAATTGTTCCCAGCCATGTGCACTCGATCAATGATTCAGTGTCAGCTGAGGAAGCTGCTGATGAGTACAAGTTCGTCATTCGACAATTAGTTAAATCCCGCATTGTAAGTGTGTCCGATGTGAGTGATAGCCCCAAGTTTGACCTCATACTACTTGGAATGGGCTCTGATGGTCACGTTGCCTCATTATTCCCTGATCACTCGGTGCTCGAGGAGAAAGATGAATGGGTTACCTTCATCACTGACTCTCCAAAACCTCCTCCAGAGAGAATCACCTTCACATTGCCTGTGATCAACTCTGCATCAAATGTGGCAATTGTTGTGACAGGTGAAAGCAAAGCAGAGACCGTACATTTAGCCATCGACGACGTAGGACCAGACTGCCCACTCCTACCTGCAAGGTTGGTACAGCCAAGAAAAGGAAAACTGACATGGTTTTTGGATAACAACGCTGCTTCAAAACTCAACAATTACCAATTTTCCGAGTAG 798 44.86 MALCGDHEDREVRIHESLEELSTDLADYIAELSEASVKERGVFSIALSGGSLISLLGKLCEAPYNKTVDWAKWYIFWADERVVAKSHADSNYKLAKDNLLSKVPIVPSHVHSINDSVSAEEAADEYKFVIRQLVKSRIVSVSDVSDSPKFDLILLGMGSDGHVASLFPDHSVLEEKDEWVTFITDSPKPPPERITFTLPVINSASNVAIVVTGESKAETVHLAIDDVGPDCPLLPARLVQPRKGKLTWFLDNNAASKLNNYQFSE* 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26748134 26751256 + CsaV3_5G033390.1 Csa05g02520 530907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02520 265 TIGRFAM pgl: 6-phosphogluconolactonase 14 258 IPR005900 GO:0005975|GO:0006098|GO:0017057
Csa05g02520 265 PANTHER 6-PHOSPHOGLUCONOLACTONASE 1 265 IPR039104 -
Csa05g02520 265 Pfam Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 18 248 IPR006148 GO:0005975
Csa05g02520 265 SUPERFAMILY NagB/RpiA/CoA transferase-like 11 260 IPR037171 -
Csa05g02520 265 Coils Coil 18 38 - -
Csa05g02520 265 PANTHER 6-PHOSPHOGLUCONOLACTONASE-RELATED 1 265 - -
Csa05g02520 265 CDD 6PGL 19 250 IPR005900 GO:0005975|GO:0006098|GO:0017057
Csa05g02520 265 Gene3D - 8 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00022 Csa-Chr5:103299 Csa05g02520 Csa-Chr5:26748134 4.72E-90 dispersed
Csa05g00023 Csa-Chr5:105623 Csa05g02520 Csa-Chr5:26748134 4.90E-96 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02520 K01057 - csv:101210739 508.064