Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02521 ATGAGTAACTCCGAAGACAAATCTTCCATGGCTGATCTGGTTCAACCTTCTGAGCATTTCTGTTATGTCAAATGCAACTTTTGTAACACTGTTCTTGCGGTTGGGATTCCATGCAGACATTGGTTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCTTTTTTGAGCACAAGACCTCCTTTACAAGGCCAATGCATTGATCATCCTCTAACTTTTCAGTCTCAGGTTGGATTCTCCAATAATGATCATATTCGAAAGGGTGCTTCCACATCTTCCACTTCCACTGCCTCTTCAATCACAAATGATTCTCCAAATTTTGTTGTCAAACCCCCTGAGAAGAAACATAGACTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAAATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTTAGTGCAGCAGCAAAAAACTGGGCAAGGTACATTCCTAATTCAGCTGCTGGGTCGGTTTCTGGTACTCACAACAACAATGAATGA 528 41.67 MSNSEDKSSMADLVQPSEHFCYVKCNFCNTVLAVGIPCRHWLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLTFQSQVGFSNNDHIRKGASTSSTSTASSITNDSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHNNNE* 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26755968 26758348 + CsaV3_5G033400.1 Csa05g02521 530908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02521 175 SUPERFAMILY HMG-box 102 156 IPR036910 -
Csa05g02521 175 MobiDBLite consensus disorder prediction 86 117 - -
Csa05g02521 175 Pfam YABBY protein 16 158 IPR006780 GO:0007275
Csa05g02521 175 MobiDBLite consensus disorder prediction 86 108 - -
Csa05g02521 175 PANTHER PROTEIN CRABS CLAW 10 173 - -
Csa05g02521 175 CDD HMGB-UBF_HMG-box 119 155 - -
Csa05g02521 175 PANTHER PROTEIN YABBY 6-RELATED 10 173 IPR006780 GO:0007275
Csa05g02521 175 Gene3D High mobility group box domain 104 162 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02521 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101219863 361.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02521 Csa-Chr5:26755968 Csa06g02479 Csa-Chr6:22073762 4.25E-38 dispersed
Csa05g02521 Csa-Chr5:26755968 Csa02g00197 Csa-Chr2:1351623 8.22E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g12 . Blo16g01078 . . . . . . Cmo04g01795 Cmo18g01120 . Cma18g01098 . Car18g01013 Sed07g2037 Cpe09g00228 Cpe01g01514 Bhi07g01472 Tan04g0975 Cmetu10g1095 . . . . . . . . . . . Cone13ag0895 Cone19ag0892 . . Lsi04g00355 Csa05g02521 . Cme10g00349 . . . . . . . . . . . Cma04g01709 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02521 . 3 172 C2C2-YABBY Transcription Factor Family AT1G69180 55.7 1.7e-44 176.0
Csa05g00395 CCT 88 249 C2C2-YABBY Transcription Factor Family AT2G45190 59.4 7.1e-42 167.2
Csa06g02479 . 1 173 C2C2-YABBY Transcription Factor Family AT1G08465 67.4 1.3e-57 219.5
Csa01g02026 . 6 181 C2C2-YABBY Transcription Factor Family AT1G08465 54.4 3.8e-44 174.9
Csa05g00395 CCT 44 238 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.9e-43 172.6
Csa02g00197 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 2.3e-41 165.6
Csa03g00304 CCT 18 182 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 2.4e-38 155.6
Csa05g00395 CCT 55 247 C2C2-YABBY Transcription Factor Family AT4G00180 55.7 6.9e-50 194.1
Csa05g02325 . 19 183 C2C2-YABBY Transcription Factor Family AT1G23420 55.4 1.1e-41 167.2
Csa01g02026 . 8 177 C2C2-YABBY Transcription Factor Family AT2G26580 69.4 1.4e-61 232.6
Csa02g00197 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 2.3e-61 231.9
Csa06g02479 . 1 173 C2C2-YABBY Transcription Factor Family AT2G26580 60.7 9.2e-50 193.4
Csa05g00395 CCT 46 209 C2C2-YABBY Transcription Factor Family AT2G26580 55.4 1.2e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31834 PF04690 YABBY 4.90E-54 CL0114 Csa TF