Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02521 ATGAGTAACTCCGAAGACAAATCTTCCATGGCTGATCTGGTTCAACCTTCTGAGCATTTCTGTTATGTCAAATGCAACTTTTGTAACACTGTTCTTGCGGTTGGGATTCCATGCAGACATTGGTTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCTTTTTTGAGCACAAGACCTCCTTTACAAGGCCAATGCATTGATCATCCTCTAACTTTTCAGTCTCAGGTTGGATTCTCCAATAATGATCATATTCGAAAGGGTGCTTCCACATCTTCCACTTCCACTGCCTCTTCAATCACAAATGATTCTCCAAATTTTGTTGTCAAACCCCCTGAGAAGAAACATAGACTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAAATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTTAGTGCAGCAGCAAAAAACTGGGCAAGGTACATTCCTAATTCAGCTGCTGGGTCGGTTTCTGGTACTCACAACAACAATGAATGA 528 41.67 MSNSEDKSSMADLVQPSEHFCYVKCNFCNTVLAVGIPCRHWLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLTFQSQVGFSNNDHIRKGASTSSTSTASSITNDSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHNNNE* 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26755968 26758348 + CsaV3_5G033400.1 Csa05g02521 530908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02521 175 SUPERFAMILY HMG-box 102 156 IPR036910 -
Csa05g02521 175 MobiDBLite consensus disorder prediction 86 117 - -
Csa05g02521 175 Pfam YABBY protein 16 158 IPR006780 GO:0007275
Csa05g02521 175 MobiDBLite consensus disorder prediction 86 108 - -
Csa05g02521 175 PANTHER PROTEIN CRABS CLAW 10 173 - -
Csa05g02521 175 CDD HMGB-UBF_HMG-box 119 155 - -
Csa05g02521 175 PANTHER PROTEIN YABBY 6-RELATED 10 173 IPR006780 GO:0007275
Csa05g02521 175 Gene3D High mobility group box domain 104 162 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02521 Csa-Chr5:26755968 Csa06g02479 Csa-Chr6:22073762 4.25E-38 dispersed
Csa05g02521 Csa-Chr5:26755968 Csa02g00197 Csa-Chr2:1351623 8.22E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31834 PF04690 YABBY 4.90E-54 CL0114 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02521 K25796 - csv:101219863 361.303