Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa05g02523 | ATGGGTAAAACCGGAGCAAAATTGCCAAGTTTCTGCCTGAACCGGATACGGCCTCATGTTAGAGTCCCTATTCAATCCAAACCGGACTTTGTTTCGGTGAAAACCGGTCCGAGCAAGAAGATTGATGATTGTTTAGATGAGAAGAATGATCATGTTGGAGTTGATCAAAGTAATAAGGCAGTGATGGGAATTGGAAGGAAGATCATGATTGTTGTTGATTCCACCATTGAAGCTGAAGGAGCTCTTCATTGGGCTCTCTCTCATACTGTCCAAATTCAAGACAACATTCTTCTTCTCCATGTCACTAAACCTTCATCTAAAGGGGAAGGACCCAATAAGGAGACAGCACCAAGAGCATATGAATTGGTTCATTCAATGAGAACTTTATGCCAATTGAAGAGACCTGAGGTGGAAACGGAAGTTGTGGTAGTGGAAGGAGGGAAGGAGAAGGGGGCAGTGATAGTGGAAGAAGCGAGGAAGAGAGAGGCGTCGTTGTTGGTATTGGGGCAGAAGAAAAGGTCGACGACATGGCGGCTTTTGATGGTGTGGGCAGGGCAGCGGTGGGGCGGTGGTGGTGGGAGCAGTGGGGGCGTGGTGGAGTATTGTATACAGAATGCGAGTTGTATGGCAATTGCAGTGAGAAGGAAGAGCAAGAAATTGGGAGGTTATTTGATCACTACAAAGCGACAAAAGGATTTCTGGCTTTTGGCTTAA | 714 | 46.36 | MGKTGAKLPSFCLNRIRPHVRVPIQSKPDFVSVKTGPSKKIDDCLDEKNDHVGVDQSNKAVMGIGRKIMIVVDSTIEAEGALHWALSHTVQIQDNILLLHVTKPSSKGEGPNKETAPRAYELVHSMRTLCQLKRPEVETEVVVVEGGKEKGAVIVEEARKREASLLVLGQKKRSTTWRLLMVWAGQRWGGGGGSSGGVVEYCIQNASCMAIAVRRKSKKLGGYLITTKRQKDFWLLA* | 238 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 26770880 | 26773822 | + | CsaV3_5G033420.1 | Csa05g02523 | 530910 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa05g02523 | 237 | PANTHER | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN | 1 | 237 | - | - | |
| Csa05g02523 | 237 | Gene3D | HUPs | 51 | 217 | IPR014729 | - | |
| Csa05g02523 | 237 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 66 | 217 | - | - | |
| Csa05g02523 | 237 | Pfam | Universal stress protein family | 66 | 214 | IPR006016 | - | |
| Csa05g02523 | 237 | CDD | USP_Like | 67 | 213 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa01g00337 | Csa-Chr1:2100296 | Csa05g02523 | Csa-Chr5:26770880 | 1.03E-53 | dispersed | |
| Csa01g00646 | Csa-Chr1:4108157 | Csa05g02523 | Csa-Chr5:26770880 | 4.75E-07 | dispersed | |
| Csa03g01160 | Csa-Chr3:9071123 | Csa05g02523 | Csa-Chr5:26770880 | 2.70E-18 | dispersed | |
| Csa04g01805 | Csa-Chr4:17700350 | Csa05g02523 | Csa-Chr5:26770880 | 4.05E-26 | dispersed | |
| Csa05g02523 | Csa-Chr5:26770880 | Csa06g02165 | Csa-Chr6:19370774 | 4.07E-24 | dispersed | |
| Csa01g00623 | Csa-Chr1:3985747 | Csa05g02523 | Csa-Chr5:26770880 | 1.52E-47 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa05g02523 | - | - | csv:101211142 | 449.514 |