Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02531 ATGGCCCTCAAAACTCTTCTAAAACCCAAATCCTCCATTACAAAATTCTTCCTTTCTTCTTTGTCATTCTCCTCCTTCTGCAAACAACAACAACAACCCATCTTCTCATTCCCTTCCCAGTCCCCACCTTCTCCTAAGAAACTCCCTTTCACTCACTCTGTTCATGGCGTTAAGCTGCAAGATCCCTACCACTGGATGTCCAATACCCACGACCCTGATTTCGCTGACTATCTCCGTCAAGAAAACCTGTATGCTGAAGCATTCATGGCTGACACTCAGGTTCTACAGCGGCAGCTCTTCTCCGAGATGACGAGTCGAATTCCCGCCAAGGTTTCCACTCCCCCTGAGCCTTGGGGACCCTGGTTTTACTACCAGTACATTCCGGATGGGAAGGAGTACCCAGTTCTATGCCGTAGGTTACAGAATGAGAAAAGCAGTTGGTTTAGGAAAATTTTAAATTTTGGTAAAGGGAATTCTGGGAAGGAAGAACAAGTATTGCTTGATTGGAATGAAATTGCTAAACAATACGGCTATGTTCACGTGGGAACTTGTCGTATTTCACCAGACCATAACTTTCTAGCTTATACAGTTGATATTACTGGCAATGAACACTTCATGCTTCAGATTAAAGACCTGAGAAATGGACTGATAATTCCCAAGTTACAGAAGGAGGGAGTTGTAAGTTTGGCTTGGGCGGAAGAAGGCAGGGTGCTTTTCTATACTCAAGCAGATGAGAATCAGCGACCTTACAGGCAAATTTTTGTCAACGTTTATATCATAGATGCCAACAACTCATTAGGTGGATTGCAAAGAATACATGAACGCATTCCTGGTATTCAATACTTTTTGGAACATCATCATGGTTTCTTTTATATCCTAACAAATGCTCCTCTTGAAAAGAATGGGGGTTGCTCGGAAGAAGATTATTATGTAGCTCGATGTCGAGTTGAAGATATTAAGTCAGCAGATTGGCAGGATATCGTCCTTCAGAGTGAAGATTTCAGCATACAGGACATGGATATTTTCAGTGGACATCTTGTGCTTTTTGTCAATAAGAATGGTGTTTCTATGTTATGTTCAATCAATTTTCCTTTAGATGCTGATCATAACCATCACTTGGAGATTGACAAACTTGACCCATGGTTTTTCCCTCTTCCCTCAAATTCCTGCAGCGTAGCTCCAGGATCAAACCATGACTTCATGAGCTCATTATACCGTGTGGTGCTCTCATCACCAGTGATGCCAGATTTGATTGTTGACTATGACATGTCCAAACGGATCTTTTCAATCATTCAGCAAGAGGAAGTAAAAGTCCAGCATGATGTTGAACTTAAAACAAATCTACCAGATACGTTGGATGCTGAGGAAGTTTCAGACACACAAAGCAAAAGAGAAAATTTCCAGAATTGTGAATCCCAAAATTGGAAGGACTTTTCGGAGGCATACTTTTGCGAAAGGATAGAAGTTAAATCACATGACGGCATCAGAATACCCTTGACCATATTGTATTCCCCAATGACTTTTAAAAAAGGACAGTCACCCGGAATTCTACAAGGGTATGGAGCATATGGTGAAATCCTGGATAAAAGCTGGTGTCCTTATCGCCTGAGTTTACTTGACCGTGGTTTTGTGCTGGCGTTTGCAGATGTCAGGGGAGGAGGTGGTGGTGGTGATTCTTCATGGCATAGATGTGGGAGTGGGCTTGAGAAACCGAACTCAATACACGACTTCATCTCTTGTGCAAATTTTCTCATTCATAATGGTTATGTTCATAAGGATCGACTGGGTTCCATTGGATACAGTGCTGGAGGTCTTCTAGTTGGGGCTGCAATCAACATGCATCCCAATCTGTTTCGCGCAGCCATTTTAAAAGTTCCATTTCTCGACATATGTAACACCCTACTGGATCCCAGTTTACCTCTCACCGTTCTGGATTATGAAGAATTTGGAAACCCACAAATACAAAAGCAATTTGAGTCTATTTTAAGCTATTCTCCTTACGATAATATATCCAAGGGAACCTGTTATCCTTCAATGCTCGTCACAGCGTCATTCCATGATGCAAGGGTTGGAGTATGGGAAGCTGCTAAGTGGGTGGCAAAAATTCGAGACACTACGTGCTCTCGTTGTTCAACTTCTGCAATTTTAAAGACCAATATGCTTGGAGGACATTTCGGTGAAGGTGGTCTCTATGGTGGATGTGAAGAGATGGCTTATGAGTACGCATTTCTCATCAAAGTCCTCAGAACTCCTGACCACGATTAA 2265 42.3 MALKTLLKPKSSITKFFLSSLSFSSFCKQQQQPIFSFPSQSPPSPKKLPFTHSVHGVKLQDPYHWMSNTHDPDFADYLRQENLYAEAFMADTQVLQRQLFSEMTSRIPAKVSTPPEPWGPWFYYQYIPDGKEYPVLCRRLQNEKSSWFRKILNFGKGNSGKEEQVLLDWNEIAKQYGYVHVGTCRISPDHNFLAYTVDITGNEHFMLQIKDLRNGLIIPKLQKEGVVSLAWAEEGRVLFYTQADENQRPYRQIFVNVYIIDANNSLGGLQRIHERIPGIQYFLEHHHGFFYILTNAPLEKNGGCSEEDYYVARCRVEDIKSADWQDIVLQSEDFSIQDMDIFSGHLVLFVNKNGVSMLCSINFPLDADHNHHLEIDKLDPWFFPLPSNSCSVAPGSNHDFMSSLYRVVLSSPVMPDLIVDYDMSKRIFSIIQQEEVKVQHDVELKTNLPDTLDAEEVSDTQSKRENFQNCESQNWKDFSEAYFCERIEVKSHDGIRIPLTILYSPMTFKKGQSPGILQGYGAYGEILDKSWCPYRLSLLDRGFVLAFADVRGGGGGGDSSWHRCGSGLEKPNSIHDFISCANFLIHNGYVHKDRLGSIGYSAGGLLVGAAINMHPNLFRAAILKVPFLDICNTLLDPSLPLTVLDYEEFGNPQIQKQFESILSYSPYDNISKGTCYPSMLVTASFHDARVGVWEAAKWVAKIRDTTCSRCSTSAILKTNMLGGHFGEGGLYGGCEEMAYEYAFLIKVLRTPDHD* 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26802138 26806537 + CsaV3_5G033500.1 Csa05g02531 530918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02531 754 PANTHER PROTEASE FAMILY S9A OLIGOPEPTIDASE 28 252 - -
Csa05g02531 754 PANTHER PROLYL OLIGOPEPTIDASE FAMILY PROTEIN 28 252 - -
Csa05g02531 754 Gene3D alpha/beta hydrolase 434 750 IPR029058 -
Csa05g02531 754 Gene3D - 256 433 - -
Csa05g02531 754 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 256 426 IPR023302 GO:0004252
Csa05g02531 754 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 42 250 IPR023302 GO:0004252
Csa05g02531 754 SUPERFAMILY alpha/beta-Hydrolases 484 704 IPR029058 -
Csa05g02531 754 PANTHER PROLYL OLIGOPEPTIDASE FAMILY PROTEIN 257 753 - -
Csa05g02531 754 Gene3D - 112 255 - -
Csa05g02531 754 SUPERFAMILY Peptidase/esterase 'gauge' domain 38 436 - -
Csa05g02531 754 PANTHER PROTEASE FAMILY S9A OLIGOPEPTIDASE 257 753 - -
Csa05g02531 754 Pfam Prolyl oligopeptidase family 535 748 IPR001375 GO:0006508|GO:0008236
Csa05g02531 754 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 599 619 IPR002470 GO:0004252|GO:0006508
Csa05g02531 754 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 540 564 IPR002470 GO:0004252|GO:0006508
Csa05g02531 754 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 676 698 IPR002470 GO:0004252|GO:0006508
Csa05g02531 754 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 657 672 IPR002470 GO:0004252|GO:0006508
Csa05g02531 754 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 569 588 IPR002470 GO:0004252|GO:0006508
Csa05g02531 754 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 514 532 IPR002470 GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02531 - - - csv:101218436 1464.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00272 Csa-Chr2:1871505 Csa05g02531 Csa-Chr5:26802138 1.29E-165 dispersed
Csa05g02093 Csa-Chr5:24208059 Csa05g02531 Csa-Chr5:26802138 1.41E-88 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g992 . . . . . . Bma14g01669 . Cmo04g01649 . . . Car04g01626 . . . Cpe01g01398 Bhi07g01448 . . . . . . . . . . . . . . . . . . Csa05g02531 Chy10g01075 Cme10g01398 . Blo11g00797 Bda07g01492 . Bpe11g01659 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007009 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 3 1 1 37