Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02538 ATGTTGAGAGCAATGACGACAAAGCCAATGATGTCTTCAGCTGAAGTTGTCTTAGCTTCCATCTCAGAAATCATTGATTCCACAGCGTGCACTGAAGAAGAACATGGAGAATTTATTGAGATTGGAAGCTACTTTTATCGAGCAGCTTTGGCTGTTGAGGAGTTGCAGGCACTAGACCCCACAAAATTTGACGAAATCCTTCAATCTCTAAATAAAAGCATCAACCTTGCGAAGTATCTTCTGGAAAAGTTCCTAACCAGCATTCAACTAGTCTCAAATTCTGATCCCATTAGCATCATAAATCCACTAGAAGAGGTGATAAAACAGATGGGTGAATGCTTGAACAAGATAGCAACCGCTACATTCAAGGAACAAAATTATGTGAAAGTGGCAATTTTATCACTTTCAGATGAGATGAAAAATATATCCATTAAAATTGACCAAGCTCAAGCCATAATGAACATGCAAGAGATTCAAACTTCTTTGGAGGAACAGTCGGAAAAAGTACCAGAAGTTATAGAAAAAGATCTATACCCCATTGACATGGACTGGGACACAAGCACAACCAATACACAATCTCCAGTTGCATTAGAGTTGAGTAACGCTGTTATTATTAGAAAGGGTGGAAGAAGCCAAATGAAGTATAGAAATGCTACATCAGACGTGGAAAAACTACCCTCAAAGACCCATTACACAAAACCTCTCTTTGAAACCTTCATCTGTCCATTGACAAAGAACATAATGGAAGATCCAGTTACCTTAGAAACGGGAGTGTCATATGAAAGACAAGCAATTGTTGAGTGGTTTCAAGAGTTTAAAGAATTTGAGGAAACTTTCTGCCCAGTCACAGGGCAAAAGCTTGTGTCCAAAGCTTTTAATTCCAATGGAGCTCTGAAGTCTACAATAGACAAATGGAATGAACGCAATGAGACACCAACAATTGAAGTCACCCGGGATTCTCTTTCCTTAGCCAGTTCAGATGAAATGGTGCTTGAGACAATCAAAGACCTGTCAAGCATCAGCAACTTAGAACAGATCTTAGATTTTGACATGTTACAGTTGCTCGTTGACTTTCTGGAGTACAGAGACAGAGATGTTAGATATGCAGTTCTACAGCTATTGCATCAAATGGTAGAAGTCAATGAAGACAACAAGATAATGATCTGTAACCAATTGAACATGTCAAGAATAATCAATCAACTATCAAGTAGTCACAGGTCCATTCGAGATACAGCATTGCTTCTGTTGTTTGAGCTTTCAAAATCCCAGTCATTGTCAGATCCAATTGGTTCAGTAACTGGGGGGATTTCAGGGCTGATCAGCATGAAGGACAACAGTTTAGATGAATTTTCTTCAGAAAAGGTAGATGAAACCTTGAGAAACTTAGAGAAATTTCCAACGAATATCAAGCTTATGGCAGAAGGTGGACTCATGGAACCCCTCATAAGGCATCTTACTGAAGGTAGTGAGTGGATGAGAATAGAAATGGCAAGCTATCTTGGGGAGATTGTCATCAGACATGATTGTATGGCGTATGTAGCTGAGAGGGCCTCTCCAGTTCTTGTCAAGATGGTGCATGAAGGAGGTACATTTACCCGCAAGGCAGCCCTTAAAGCTCTATTGCAAATTTCATCTCACAGGCCTAATGGTAGAACATTAGCAGAAGCTGGAGCTGTACAAGTCATGGCTGAAGAGATGTTCACTCGTACCATCCGTGATGAACTTAATGATCCAAAAGCAGAAGCGACTAAAATCCTGGCAAATATATGTGAATTCGGTCTTGACCTTGAGACACTTCAAGTTAATGCTCAAGGCTACACTATGAATTCAGAATATGTAGTCTACAACATTATCGAATTGCTCAAGAACTCAACTTCAGATGAATCAATATTTAGCACGAGTCTCATCAGAATACTGTTATGCTTGACGAAATCTCCAAAATCAATGGACACCATTGTTTCAGGTGTAAAAAACACTGAAGCATGTGATACCCTCATATATTTCATCAGTAGTCCAGATGAAGAACTTGGAGCTGCAGCAATAAAATTGCTCATATCACTGTCCGCTTACATGGGGTTCACAATGACAGAAAGACTCTGCAAAACCAGTGACCAAGTGGCGAATCTTATCAGCAGCATTGCCTTGACAAACCAAATCAAAGAGAAGCAGACACTTTCAGCAACATTCTTAGCAAAACTCCCTCACGATAGTCTAGCCCTCAACACCATTCTGGTAAACAAGAACACCGTCCCCAAGCTCCTGCAAACAATCAATCATATACAAAGCAATGGAACAGGAATGAGCAGGTATGCAAGTGCTTTACTAGAGGGTTCAGTGGGAATTCTTGTCAGATTCACAGCAACAATTTATGACCCACAAATATTGTTTCTGGCAAAATTACACAATTTTACATCAGTGTTTGCCAACCTGCTAACCCAAACATCAAGCAATGAAGTTCAAAAGCTATCTGCCATTGGGTTGGAGAAACTATCATCAGTATCTACTAGTCTATCCAAGCCCCTGAACATTAAAAACAAGGTTATGAAATTTCTCCACTTACCCAAGCTTCTATCGTTAGGTCCATCACAGAAGGGTCACTTACGAGTATGCCCAGTTCATAAAGGGGCTTGCTCTTCACAAAACACATTCTGTTTAGTCCATGCAAAGGCAATTGAAAAGTTATTGACATGTTTAGACAATGAGAACGAAGAGGTAGTTGAGGCAGCTTTGTCAGCCATTTGTACGCTTGTGGATGACAAAGTGGATATGGACAGAAGTGTGAGGCTACTGATCGAATTTAACACAATAAGGCATGTCCTGAATGTGGTAGGAATCCATAAACAAGAATCTGTATTGCATAAATCATTTTGGTTGATGGAGAAGTTGTTGCTCAAGGGTGGGGAAGAATCACTTTCCAATATATCACAGGACAGATCGTTGCCTGCAATTTTGGCTACTGCTTCCCATCAATGGAACAGCGAGACGAGGCGAATAGCAGAAAAAATATTAACCCATTTGAAAAAGCTGATTAACGACAATCAATAA 3045 40.0 MLRAMTTKPMMSSAEVVLASISEIIDSTACTEEEHGEFIEIGSYFYRAALAVEELQALDPTKFDEILQSLNKSINLAKYLLEKFLTSIQLVSNSDPISIINPLEEVIKQMGECLNKIATATFKEQNYVKVAILSLSDEMKNISIKIDQAQAIMNMQEIQTSLEEQSEKVPEVIEKDLYPIDMDWDTSTTNTQSPVALELSNAVIIRKGGRSQMKYRNATSDVEKLPSKTHYTKPLFETFICPLTKNIMEDPVTLETGVSYERQAIVEWFQEFKEFEETFCPVTGQKLVSKAFNSNGALKSTIDKWNERNETPTIEVTRDSLSLASSDEMVLETIKDLSSISNLEQILDFDMLQLLVDFLEYRDRDVRYAVLQLLHQMVEVNEDNKIMICNQLNMSRIINQLSSSHRSIRDTALLLLFELSKSQSLSDPIGSVTGGISGLISMKDNSLDEFSSEKVDETLRNLEKFPTNIKLMAEGGLMEPLIRHLTEGSEWMRIEMASYLGEIVIRHDCMAYVAERASPVLVKMVHEGGTFTRKAALKALLQISSHRPNGRTLAEAGAVQVMAEEMFTRTIRDELNDPKAEATKILANICEFGLDLETLQVNAQGYTMNSEYVVYNIIELLKNSTSDESIFSTSLIRILLCLTKSPKSMDTIVSGVKNTEACDTLIYFISSPDEELGAAAIKLLISLSAYMGFTMTERLCKTSDQVANLISSIALTNQIKEKQTLSATFLAKLPHDSLALNTILVNKNTVPKLLQTINHIQSNGTGMSRYASALLEGSVGILVRFTATIYDPQILFLAKLHNFTSVFANLLTQTSSNEVQKLSAIGLEKLSSVSTSLSKPLNIKNKVMKFLHLPKLLSLGPSQKGHLRVCPVHKGACSSQNTFCLVHAKAIEKLLTCLDNENEEVVEAALSAICTLVDDKVDMDRSVRLLIEFNTIRHVLNVVGIHKQESVLHKSFWLMEKLLLKGGEESLSNISQDRSLPAILATASHQWNSETRRIAEKILTHLKKLINDNQ* 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26833398 26838893 + CsaV3_5G033570.1 Csa05g02538 530925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02538 1014 SUPERFAMILY RING/U-box 230 313 - -
Csa05g02538 1014 SMART arm_5 338 379 IPR000225 GO:0005515
Csa05g02538 1014 SMART arm_5 465 505 IPR000225 GO:0005515
Csa05g02538 1014 SMART arm_5 878 918 IPR000225 GO:0005515
Csa05g02538 1014 SMART arm_5 381 421 IPR000225 GO:0005515
Csa05g02538 1014 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1010 - -
Csa05g02538 1014 Gene3D - 509 688 IPR011989 -
Csa05g02538 1014 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 42-RELATED 9 1010 - -
Csa05g02538 1014 Pfam U-box domain 237 310 IPR003613 GO:0004842|GO:0016567
Csa05g02538 1014 CDD RING-Ubox_PUB 239 285 IPR045210 -
Csa05g02538 1014 Pfam Armadillo/beta-catenin-like repeat 878 916 IPR000225 GO:0005515
Csa05g02538 1014 SUPERFAMILY ARM repeat 617 1007 IPR016024 -
Csa05g02538 1014 SUPERFAMILY ARM repeat 330 689 IPR016024 -
Csa05g02538 1014 Gene3D - 791 1014 IPR011989 -
Csa05g02538 1014 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 318 IPR013083 -
Csa05g02538 1014 ProSiteProfiles U-box domain profile. 234 312 IPR003613 GO:0004842|GO:0016567
Csa05g02538 1014 Gene3D - 321 508 IPR011989 -
Csa05g02538 1014 SMART Ubox_2 238 305 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02538 - - - csv:101217719 1929.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01151 Csa-Chr5:11863289 Csa05g02538 Csa-Chr5:26833398 4.84E-33 dispersed
Csa05g02538 Csa-Chr5:26833398 Csa06g01954 Csa-Chr6:17644201 4.45E-110 dispersed
Csa05g02538 Csa-Chr5:26833398 Csa01g02400 Csa-Chr1:21307088 1.03E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29