Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02541 ATGGAGTACTCAAAATGCCAACAGATTATGGATATTGGTGACAGAGATAAATTTAGACTAGAAAGTAGCATAGAGGACACTATTAACTGTTCGAATAGCATGTCATCGGATTGGCAATTTGGCGAGACAACTCTCACGACTATGCCGACTGGTTTGGTTTTGCCAGGGAATGTGGATGTAGTTAGGAATCAGGATATGGTTGGTTGTTCTTCTTCCACTGCTTCTATGGTAGAGTCATTTAGCTCCACTATCTGGGAACAATCAGCTCATTGTCAGAACTTGGGAATTAGCAACATTCAAGGCCATAACATCTCCAATACTTCAAATATTATAGGAATTAGTAAGGCCAGTGGCTGTCCAGTTTCTTCAAGCAGTGACATTGATAGAACGCTTGACATCAGCTGGAACCTATCCCATAATATGTTAAAAGGGGGTGTTTACCTACCTAATTTCCCGGGTATGCTCCCGCCGAGTTTATCTCAACTTCCAGCTGATTCTTCATTCATTGAGCGTGCAGCCAGGCTTTCCTGCTTCAGTGGTGGGAATTTTGGTGGTGATGTTGGACATTTCAACGTTCCTGACCCTGTGGGTGTTTTTTCCAGAGGCATGGGAGTAATCCCTGAGAGATGGGATGAAATTCCACGAAACGGGTTAGGTTTGGCATCTGGAACAGGAGGACAATCTCAAAGAAACGTGGTTAACAGTGAATCTTCCATGCCTGTTTGTTTGACTAATGAACATGGAGCTACTGAAAGGGATTCACCTAAAAATGGAAGCCCTTTGAAATTGGATGGTCGTGGTAAACTTGCTGTTGATGGTTCTGCTAATGAATCTGATGAAGCTGAGTGTAGCGGGGGTGATGGTTTGGGTGAACCATGCACGTTAGAGGCCACGGGTAAGGAACTTTCTACGAAGGGTCTCGGCACGAGGAAAAGGAAAAGAAGTGGACAGAAGACTGAACTTGATCAAGCCAATGGACCTCTTCAACAAACTACTGTTTCACCTAAGGATGATGCTGAAACTCAGCGAAAAAGAGATCAAAATCCGAATTCAACTGCAAACAAGGGTACAGGAAAACATGGTAAACAGGCATCTCAACCTTCTGATCCTCCAAAGGAAGAGTATATTCATGTTAGAGCTCGAAGGGGTCAGGCAACAAACAGTCATAGTCTTGCAGAGAGGGTAAGGAGGGAGAAGATCAGTGAGAGGATGAAGTTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACTGGAAAGGCAGTGATGCTTGATGAAATCATCAACTATGTCCAATCACTGCAACGACAAGTCGAGTTTTTATCAATGAAACTTGCTACCGTAAATCCAAGGTTGGATATTAACATCGATGGAGTTGTAGCCAAAGATATTCTTCAATCACGAGTTGGTCCATTGTCGACATTGGGATTTTCTTCGCATATGCCCGTTGCTTGTCCTCCACCTCATATTTCTCATCACGAACTTATCCCAACCAGTTTTCCTGCCATAGGGAGCTCTGAGATGTTAAGAAGCACAATGAATTCGCATATGACTCCAAGGTCTGGTGGATTTAAGAATCCTTCTCAGATAAAGAATGTATGGGAAGGTGAACTCCAAAACCTTGTGCAGATGAGCTTTGGGATGCCCACTCCCCCAAATTGTTTAGAAGTTGAAGGATCTGATTCATCCGGCAGAACAAAAGTTGAACATTGA 1713 43.49 MEYSKCQQIMDIGDRDKFRLESSIEDTINCSNSMSSDWQFGETTLTTMPTGLVLPGNVDVVRNQDMVGCSSSTASMVESFSSTIWEQSAHCQNLGISNIQGHNISNTSNIIGISKASGCPVSSSSDIDRTLDISWNLSHNMLKGGVYLPNFPGMLPPSLSQLPADSSFIERAARLSCFSGGNFGGDVGHFNVPDPVGVFSRGMGVIPERWDEIPRNGLGLASGTGGQSQRNVVNSESSMPVCLTNEHGATERDSPKNGSPLKLDGRGKLAVDGSANESDEAECSGGDGLGEPCTLEATGKELSTKGLGTRKRKRSGQKTELDQANGPLQQTTVSPKDDAETQRKRDQNPNSTANKGTGKHGKQASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGVVAKDILQSRVGPLSTLGFSSHMPVACPPPHISHHELIPTSFPAIGSSEMLRSTMNSHMTPRSGGFKNPSQIKNVWEGELQNLVQMSFGMPTPPNCLEVEGSDSSGRTKVEH* 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26846039 26850063 - CsaV3_5G033600.1 Csa05g02541 530928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02541 570 CDD bHLH_AtBPE_like 374 459 - -
Csa05g02541 570 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 26 569 IPR024097 GO:0006355
Csa05g02541 570 MobiDBLite consensus disorder prediction 221 244 - -
Csa05g02541 570 Pfam Helix-loop-helix DNA-binding domain 387 435 IPR011598 GO:0046983
Csa05g02541 570 Gene3D - 381 454 IPR036638 GO:0046983
Csa05g02541 570 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 384 434 IPR011598 GO:0046983
Csa05g02541 570 MobiDBLite consensus disorder prediction 217 372 - -
Csa05g02541 570 MobiDBLite consensus disorder prediction 346 364 - -
Csa05g02541 570 MobiDBLite consensus disorder prediction 305 319 - -
Csa05g02541 570 PANTHER TRANSCRIPTION FACTOR BHLH49 26 569 - -
Csa05g02541 570 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 382 452 IPR036638 GO:0046983
Csa05g02541 570 MobiDBLite consensus disorder prediction 320 336 - -
Csa05g02541 570 SMART finulus 390 440 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03604 Csa-Chr3:32125102 Csa05g02541 Csa-Chr5:26846039 3.10E-44 dispersed
Csa05g01353 Csa-Chr5:14293739 Csa05g02541 Csa-Chr5:26846039 4.42E-145 dispersed
Csa05g02541 Csa-Chr5:26846039 Csa07g01563 Csa-Chr7:16047841 8.93E-54 dispersed
Csa05g02541 Csa-Chr5:26846039 Csa04g02505 Csa-Chr4:24884098 6.01E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31835 PF00010 HLH 6.40E-06 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02541 - - csv:101209589 1124.77