Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02543 ATGCAAGCAGACACTCTAACAGCACATAAGCTTGCTGTTCTTCATCCAGTGAGACCTTTCATTAGAAGTTCTTTCCCGCGCTCAAAACTCATCTCTACTTTCGCTTTCATTCCCAAAGCTTCCCGCCAACCAGGCTCCTTCCACTTGCCTCAGAATTCCTCCTTCAAGGGTGTGCGGTATGACAGTCCAGTAATGGGTGCAATGGAGTTATCTGATCTTGAAGATGTGGATTTGTTGGTGGAGATGTGCATTACGCATACATTGCCACCGGCTCTAACGCTTAAGCAGGGTCTGGAGAGTATAACTGAGGCTATTGAAAAGTTTAAATTAGAATCTCCACGTTCTTCCCAGGGAGTTTTCAGGTTTCAGGTGGCTGTTCCCCCGAGTGCAAAAGCTCTTTTGTGGTTCTGTTGTCAACCAGAGTCGTCTGAAGTTTATCCTATATTTTTCGTTTCCAATGAGAAGGACCCGACGATTAAGTCATTGTACTTGAATGATACCCGCGGTGTTTTTGGAATTGGTACTGCAATTTACTTTGCAAGCTTGTCTTCTACTTCATCAAAACAAAGTACATTGAAAAGGTATGTCATGAATGATTCAGCTCCCATTATGGCTTATGGTTTTGTCAATGCTAATAACGGGGAGACATCTTCACTAAAGAACGAGGCTGGTCATTCATACTATTGCGTTCCCCAAATTGAGTTGAGTGAGTACGAGGGCATTTCTGTTCTCTCTGCAACACTTGCATGGAGTGAATCTTTCCCTTGTACATTTGAGGAAGCTCTCCATTCTTTGGGCTCATCTATCTACCAGATCAGTACTAATTTTCCATCTAGTGAAAACTGCCAGTACAAATATTTAAGATCTGCATTAACTGCTTCAAAACTTGTGGACAGAACAAATCAGATGGCATACATGAAAGTGCTTTCTGTAGCTGGTGAAGGTGTCAGGACAGGCATCATGGAAATGGAGTCTTCACTCTTCCATCAGTTCTGCATTAGGCTTTCACCAAGTGTTGCCGTTGCATGTAATATGTTGGATCATATCAACGAAACTGGCCACTCAGAGCAAGAGCATGCCAACATTAATGCTCTCTGGGCATCACTCATAGTTGAAGAATGTTCTCGTCTTGGTTTGACGTATTTTTGCATAGCTCCTGGATCAAGGTCATCGCCTCTTGCCATCGCTGCTGCAAGTCATCCCCTGATAACATGTACTGCATGCTTTGATGAACGCTCTCTTGCTTTTCATGCAATTGGGTATGCCAAGGGATCTCATAGCCCAGCAGTAGTAATCACATCATCTGGCACTGCTGTTTCAAATCTTCTTCCTGCTGTTGTTGAAGCTAGTCAAGACTTTCTTCCTCTTTTATTGCTCACAGCTGACCGTCCCTCGGAGCTACAGAATGCAGGAGCAAATCAAGCTATTAATCAGGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAGTCTTCCGGCCCCAACTGATCAACTTCCCGCCAGAATGGTACTTACCACTCTTGATTCTGCTGTACATTGGGCAACTTCTTCACCCTGTGGCCCCGTTCACATAAACTGTCCATTTAGAGAGCCACTGGAAAATAGTCCAAGCCCATGGAATTTGAGTTGCTTAAATGGATTACACATTTGGTCATCAAGCACTGAAGTTTTTACCAAATATATTCGACTTGAAGCATCTCCAACATCTACTGATACTTTTGGTCATATGGCAGAGGTTTTGAAAGTAATCCATGGAGCCAGAAACGGAGTTCTACTTCTTGGATCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTATTGGCCAAACATATTTCTTGGCCTATAGTGGCTGATGTATTGTCTGGTTTACGATTAAGGAAGAGTTTGTCTCCCTTCCTAGAAATGAAAAATAACTTTTTCTTTATTGATCACCTTGATCATGCTTTGCTTTCAGATTCGGTGAGAAAATGGCTAAAATTTGACGTGATTATTCAGATCGGAAGCAGGGTAACAAGCAAACGTGTTTCAAAGTTGCTTGAGGATTGCAGTCCCTGTTCATACATCATGGTTGATAAGCATCCAGATCGTCATGATCCATCACATATTGTAACCCATAGAATTCAAAGCACCGTCTTAGAGTTTGTTGGTTGTTTACTTAAAGCTAGTTTTCCTCTCAATAAGAGCAAGTTGACTGCTACTTTACGAGCATTGAATATGATGGTTGAGTGGGAAATTCAATTTCAAATTTCTGCTCATTACTCTCTATCTGAGCCAGAAGTTGCTCAGGTAATCTCAGAAGCACTTTCATTTGATTCTGTTCTGTTCCTGGGGAACAGCATGCCAATCCGCGATGTGGATATGTATGCATATGGTTGGTCAAAATGCAACGACAGTGGAGCTGCTATACCATTAAACTTACAAATGCCATTTTACTGGACATGGACTTCTGGAAATAGGGGAGCCAGTGGTATTGACGGACTTCTTAGCTCAGCAGTTGGTTTTTCTGTGGGATGCAACAAACGAATCACTTACAGGGTTTATGGGTTATATAAAGGACTATGCTGGTTCATTATATATGCCCTGGTAATGCAGTTTCAAAATTCTCTTCCGATATATCATGTTTCAAATAAGGTGCTTTGTGTACTTGGAGATGTTTCTTTCCTTCATGATACAAATGGCTTAGCAATTCTGAACAAGAGGATGAAGAGGAAACCTGTGACTGTCGTTGTAATCAATAATAATGGTGGGGCAATCTTCAGTCTCCTTCCTATCAAGGACAAAGTAGATGCAGCAATACTAGACCAATTCTTTCACACCTCTCACCAGGTTTCACTCCGAAACCTATGTGTGGCACATGGCCTGAAGCATTTACATGTACGGACAAAGAAGGAACTTCAAGATGCTTTATTTATGTCTCATCATGAAGAAAATGACTGCATAATCGAGGTCGAAAGTTCCATTGATGCCAATACTACTTTCCACAGTGTCTTGAGGAAGTTCACTTGTCAAGCAGTAGATCATGGTTTACGCATCTTTTCAAGGCTTTATTCTGAAGAGTCTGTTTCACCTGGACTCTTCCTTTGCAAGATAAGTAGAATGGAATGCACATTGTTCAGAATCCCGCTATGTGCTCCACCTACGACTTCATCTAGTTCTTTTGATCAAGTCAGACGGGAGTTCTTCCGAGAAGGTTTTATTTTGTCTTTGTTTCTGGAGGACGGGAGTCTTGGGCTTGGTGAGGTTTCACCCCTTGACATCCACAGAGAGAACCTACTAGATGTGGAAGAGCAACTTAATTGTCTCATTCCTATATTAAAGGGAGCCAAGATCAGCAGCTCCATTCCTCTGCTACGGGGCTCGTTTTCATCTTGGGTTTTCCATGAACTGGGAATACCACCAAGTTCAATCTATCCAAGTGTTCGATGTGGTTTGGAAATGGCTGTTCTCCATGCCATAGCAGGGAGAAAAGGTTGCGGCTTGTTAGATGTACTCCAGCATCAGTTAGATGAAGAAAAGAACTTGAAAACTTTGTCAAAAGTTCAAATTTGTGGGCTTTTGGATTCCGGTGGAACTCCATCTGAGGTTGCTTTGGTTGCTAAGACACTTGTAGCCCGACAACGGAATGTCATGTATGATGCTGCTGTTGTACAGGAAGTAAGGAAGAAGCTTGGCAACCAAATTGAACTCCGCGTTGATGCCAATAGGAACTGGAGCTATGAAGAAGCTCTTTTATTTAGCTCTTTGGTGAAGGACTGTGGCCTCCAATATATTGAGGAACCAGTTATGGATGAAGATGCTATTATTAAATTTTGTGAAGAGAGTGGTTTACCTGTCGCACTGGATGAAACTATCGATCGTATTCAAGATAATCCTGTGAAAGAACTTGCCAAGTATGCCCATCCAGGAATTGTTGCTATCGTTATAAAACCAAGTGTGGTTGGCGGATTTGAAAATGCAGCATTAATAGCGAGGTGGGCACAGCAACATGGAAAAATGGCTGTTGTTAGTGCTGCATTTGAAAGTGGTGTAGGTTTGTCCGGATATGTACACTTATCCTGTTATCTGGAGCTTCAGAATGCAGAAGTAAGAAAACTGATGAATATTCAACCAGCCCCATCTATAGCCCACGGTCTAGGAACTTACCGTTGGCTTGAAGAAGATGTAACTGTCAATCCTCTCAGGTTTCGGCGTGACCCTCATAGTGGCATCATTGAAGCATCTGTTGCTGAGGCAAATCAACTTTTAGAAAATTTTCAAATCAACCAGAAGATTGTTTGTAGAAAATTTACTGACAGGCAAGTTCGCAGCTACAGATTAAGTGTAGACTCAAAGGGGTTCTCTTATTCAATTAAAGTTCTAGAGGTTGGACAAAGAACAAACGATAACGTGCTCTTCTTTCTTCATGGATGTCTTGGAACTGGTGAAGACTGGCTTACAATCATGAAAGGTGTCTCAGGTTCAGCCAGATGCATTTCTCTTGACCTGCCTGGTCACGGGGAGTCAACAACAGAAAAGAACGATTGTGATGTTCATGGTGTGGAGGAACCAAGTTTTTCAATGGAGGTTGTTGCTGATCTACTGTATAAGTTGATTCAACATCTTGCTCCTGGTAAAGCTATAGTTAACGTTGTAGGGTATTCAATGGGGGCTAGGATTGCCATGTACATGGCCCTGAGATTTGGTGACAAGATTGGAAGAGCTGTTATAATATCTGGAAGCCCTGGATTAAAAGACAAGGTGGCAAGAAAAATCCGTAGAGTTAAAGATGATTCTAGAGCAAGAGTCCTTAAGCTCTATGGCTTACAAAGCTTTCTGGAAGCGTGGTATGGTGGGGAACTTTGGAAAAGTTTAAGAGAACATCCACATTATAGTCAAATTATTGCCAGACGATTGAAGCATGATGATGTGCAGCCTCTTGCAAAAGCTCTATCTGAATTAAGCATTGGAAGGCAGCCGCAATTGTGGGATGAATTAAAATGCTGCAAAACACCTCTTTCGATCATTGTTGGGGAGAAGGATACAAAATTTAAGACAATTGCGCAGCAAATTCTATCTCAAATCAATACGAGCAAGAGGATCAAAGATGAACCGGCTGTCGATCTCCATGAAATAGTTGAGATCCCGGACTCAGGACATGCTGCACATCTGGAGAATCCTCTTGCTGTTGTCAATGCATTAAGTAGATTTCTAATAAGGAGAAGAACACAGCACTCTTCCAACGTGGATTTAGCAGGCCAAGTCGCAATTACGCATGAAAGCCACCTTTTGTAA 5277 42.05 MQADTLTAHKLAVLHPVRPFIRSSFPRSKLISTFAFIPKASRQPGSFHLPQNSSFKGVRYDSPVMGAMELSDLEDVDLLVEMCITHTLPPALTLKQGLESITEAIEKFKLESPRSSQGVFRFQVAVPPSAKALLWFCCQPESSEVYPIFFVSNEKDPTIKSLYLNDTRGVFGIGTAIYFASLSSTSSKQSTLKRYVMNDSAPIMAYGFVNANNGETSSLKNEAGHSYYCVPQIELSEYEGISVLSATLAWSESFPCTFEEALHSLGSSIYQISTNFPSSENCQYKYLRSALTASKLVDRTNQMAYMKVLSVAGEGVRTGIMEMESSLFHQFCIRLSPSVAVACNMLDHINETGHSEQEHANINALWASLIVEECSRLGLTYFCIAPGSRSSPLAIAAASHPLITCTACFDERSLAFHAIGYAKGSHSPAVVITSSGTAVSNLLPAVVEASQDFLPLLLLTADRPSELQNAGANQAINQVNHFGSFVRFFFSLPAPTDQLPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWNLSCLNGLHIWSSSTEVFTKYIRLEASPTSTDTFGHMAEVLKVIHGARNGVLLLGSIQSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSPFLEMKNNFFFIDHLDHALLSDSVRKWLKFDVIIQIGSRVTSKRVSKLLEDCSPCSYIMVDKHPDRHDPSHIVTHRIQSTVLEFVGCLLKASFPLNKSKLTATLRALNMMVEWEIQFQISAHYSLSEPEVAQVISEALSFDSVLFLGNSMPIRDVDMYAYGWSKCNDSGAAIPLNLQMPFYWTWTSGNRGASGIDGLLSSAVGFSVGCNKRITYRVYGLYKGLCWFIIYALVMQFQNSLPIYHVSNKVLCVLGDVSFLHDTNGLAILNKRMKRKPVTVVVINNNGGAIFSLLPIKDKVDAAILDQFFHTSHQVSLRNLCVAHGLKHLHVRTKKELQDALFMSHHEENDCIIEVESSIDANTTFHSVLRKFTCQAVDHGLRIFSRLYSEESVSPGLFLCKISRMECTLFRIPLCAPPTTSSSSFDQVRREFFREGFILSLFLEDGSLGLGEVSPLDIHRENLLDVEEQLNCLIPILKGAKISSSIPLLRGSFSSWVFHELGIPPSSIYPSVRCGLEMAVLHAIAGRKGCGLLDVLQHQLDEEKNLKTLSKVQICGLLDSGGTPSEVALVAKTLVARQRNVMYDAAVVQEVRKKLGNQIELRVDANRNWSYEEALLFSSLVKDCGLQYIEEPVMDEDAIIKFCEESGLPVALDETIDRIQDNPVKELAKYAHPGIVAIVIKPSVVGGFENAALIARWAQQHGKMAVVSAAFESGVGLSGYVHLSCYLELQNAEVRKLMNIQPAPSIAHGLGTYRWLEEDVTVNPLRFRRDPHSGIIEASVAEANQLLENFQINQKIVCRKFTDRQVRSYRLSVDSKGFSYSIKVLEVGQRTNDNVLFFLHGCLGTGEDWLTIMKGVSGSARCISLDLPGHGESTTEKNDCDVHGVEEPSFSMEVVADLLYKLIQHLAPGKAIVNVVGYSMGARIAMYMALRFGDKIGRAVIISGSPGLKDKVARKIRRVKDDSRARVLKLYGLQSFLEAWYGGELWKSLREHPHYSQIIARRLKHDDVQPLAKALSELSIGRQPQLWDELKCCKTPLSIIVGEKDTKFKTIAQQILSQINTSKRIKDEPAVDLHEIVEIPDSGHAAHLENPLAVVNALSRFLIRRRTQHSSNVDLAGQVAITHESHLL* 1759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26863119 26879356 - CsaV3_5G033620.1 Csa05g02543 530930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02543 1758 Gene3D - 1174 1403 IPR036849 -
Csa05g02543 1758 Gene3D alpha/beta hydrolase 1456 1732 IPR029058 -
Csa05g02543 1758 Pfam Middle domain of thiamine pyrophosphate 587 778 IPR032264 -
Csa05g02543 1758 Gene3D - 358 554 - -
Csa05g02543 1758 SUPERFAMILY Enolase C-terminal domain-like 1193 1399 IPR036849 -
Csa05g02543 1758 Gene3D - 573 749 - -
Csa05g02543 1758 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 368 536 IPR012001 GO:0030976
Csa05g02543 1758 Gene3D - 756 1002 - -
Csa05g02543 1758 Gene3D - 1033 1173 IPR029017 -
Csa05g02543 1758 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 754 985 IPR029061 -
Csa05g02543 1758 SUPERFAMILY alpha/beta-Hydrolases 1452 1732 IPR029058 -
Csa05g02543 1758 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 1231 1262 IPR018110 GO:0009063
Csa05g02543 1758 CDD TPP_SHCHC_synthase 757 988 - -
Csa05g02543 1758 SUPERFAMILY Enolase N-terminal domain-like 1031 1164 IPR029017 -
Csa05g02543 1758 SUPERFAMILY DHS-like NAD/FAD-binding domain 522 738 IPR029035 -
Csa05g02543 1758 Pfam alpha/beta hydrolase fold 1464 1576 IPR000073 -
Csa05g02543 1758 TIGRFAM menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 366 837 IPR004433 GO:0009234|GO:0030976|GO:0070204
Csa05g02543 1758 SMART MR_MLE_2 1194 1279 IPR013342 -
Csa05g02543 1758 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 170 1734 IPR004433 GO:0009234|GO:0030976|GO:0070204
Csa05g02543 1758 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 359 540 IPR029061 -
Csa05g02543 1758 CDD TPP_PYR_MenD 368 529 - -
Csa05g02543 1758 Pfam Enolase C-terminal domain-like 1210 1372 IPR029065 -
Csa05g02543 1758 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 360 1003 IPR004433 GO:0009234|GO:0030976|GO:0070204
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02543 K14759 PHYLLO; isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / o-succinylbenzoate synthase [EC:5.4.4.2 2.2.1.9 4.2.99.20 4.2.1.113] - csv:101217012 3388.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00215 Csa-Chr1:1392804 Csa05g02543 Csa-Chr5:26863119 5.37E-18 dispersed
Csa03g03442 Csa-Chr3:30948928 Csa05g02543 Csa-Chr5:26863119 2.02E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1015 . . . . . . . . Cmo04g01639 . . . . . . . . Bhi07g01426 . . . . . . . . . . . . . . . . . . Csa05g02543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37