Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02544 ATGGCTACTCCCATTCGCCGGCATATCTTCCTCTTATCTTCATCCTTCACTGCGAGTACCAGAACTATGGCGTCTTCTCCCACTCCCATTTCTCCACTATCTTTTACCAATCCAATATCAACATCAAGAACGAAACCAAAATCATTACCATTTCCAAACAAACCGCCGTCTTCATTGCCTCCTGCGTTGAACTCCACCCCCAAACCTCCGCCCAAGGACCTTTACTTCAACCACGATGGCTCTACTTTTAAAAAACTTCAGGTCGGAGTTAATTTGGTAGCGGAGCTGGTGGGTATTACCTTGGGACCGAAGGGGAGGAATGTGGTGCTTCAGAATAAATATGGACCGCCCAAGATCGTCAACGATGGTGAAACCGTCCTGAAAGAGATTGAGCTGGAAGACCCTTTAGAGAACGTTGGGGTGAAATTGGTGAGACAAGCTGGTGCTAAGACGAATGACCTTGCTGGTGATGGTTCCACTACATCTGTCGTTCTTGCCCAAGGATTGATTGCTGAGGGTATGAAGGTTATTGCATCTGGCATGAATCCTGTTCAAATTGCACGTGGGATTGAGAAGACTGCAAAAGCACTAGTTTCTGAGCTGAAATTGATGTCAAGAGAGGTTGAAGACCACGAGATAGCACACGTGGCCGCAGTTAGCGCAGGGAATGATTATGCTGTGGGAAGTTTGGTTTCAGATGCCTTTCGTCAAGTTGGATGGAAGGGAGTCGTCCAAATTGAAAAAGGGAAGAGTGTGGATAATAGTTTACAAATTGTTGAAGGGATGCAATTTGATCGTGGATATTTATCCCCATACTTCGTGACTGATAGAAGGAAGATGGTAGTAGAATTCCATGAGTGCAAGTTACTGTTGGTCGACAAAAAAATTTCAGATCCAAAGGAGATGTTTAAAATATTGGACAATGCAGTGAAAGAGAAATACCCAATTGTGATATTGGCAGAGGGCATTGAGCCGGAAGCTCTGGCTCCAGTAATTAGGAATAAACTTAGAGGTGTGCTGAAGGCAGCCGCTATCAAGGCTCCTGCCTTTGGCGAGCGCAAGAGTCACTATTTAGATGACATAGCCACTTTAACTGGAGCTACCGTGGTCAGAGAAGATAATGGATTGACGTTAGAAAAGACAGGCAAGGAGGTATTGGGCTCCGCTTGTAAGGTTGTTATATCAAAAGATTCCACACTGATAGTTACAGATGGGAATACTCGGGAAGCTGTTCAGAAAAGGGTCTTACAAATTCAAAAGCTTATGGAGAACACTGAGGAAAAATTTCCGAAGAAGATATTGAATGAGAGAATTGCAAGATTATCTGGGCGAATTGCAATAATTCAGGTAGGAGCACAAACTGAAGTTGAGTTGAAGGATAGACAGTTAAGGATCGAGGATGCTTTGAATGCATCAAAGGCTGCTATTGAAGAAGGTGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACAAAGGTGGATGCTATAAAAAATGTCCTGGAAAATGACGAGCAGATGGTTGGAGCCGAAATTTTCAAAAGGGCTTTGAGTTATCCTACAAAACTAATAGCGAGAAATGCCGGTGTCAATGGAAGTGTTGTTATAGATAAGATTCTAAGTAACAATGATCTGGATTATGGATATAATGCCGCCACAGACCGTTACGAGGATCTAATGAAAGCTGGTATCATGGATCCATCAAAGGTTGTTAGATGTTGCCTGGAGCATGCAGCTTCTGTTTCCAAAACTTTCCTGACATCCGATGCTGTTGTAGTTGATATGAAGGAATCACAGCTCATCCCAAGAAGAACACCGATGCCAATCTCAGGAGGCGTCGGACAATTGGGTCTCTAG 1860 43.71 MATPIRRHIFLLSSSFTASTRTMASSPTPISPLSFTNPISTSRTKPKSLPFPNKPPSSLPPALNSTPKPPPKDLYFNHDGSTFKKLQVGVNLVAELVGITLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVIASGMNPVQIARGIEKTAKALVSELKLMSREVEDHEIAHVAAVSAGNDYAVGSLVSDAFRQVGWKGVVQIEKGKSVDNSLQIVEGMQFDRGYLSPYFVTDRRKMVVEFHECKLLLVDKKISDPKEMFKILDNAVKEKYPIVILAEGIEPEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVVREDNGLTLEKTGKEVLGSACKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEEKFPKKILNERIARLSGRIAIIQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKNVLENDEQMVGAEIFKRALSYPTKLIARNAGVNGSVVIDKILSNNDLDYGYNAATDRYEDLMKAGIMDPSKVVRCCLEHAASVSKTFLTSDAVVVDMKESQLIPRRTPMPISGGVGQLGL* 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26880403 26885051 - CsaV3_5G033630.1 Csa05g02544 530931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02544 619 ProSitePatterns Chaperonins cpn60 signature. 474 485 IPR018370 GO:0005524|GO:0006457
Csa05g02544 619 MobiDBLite consensus disorder prediction 49 68 - -
Csa05g02544 619 Pfam TCP-1/cpn60 chaperonin family 93 596 IPR002423 GO:0005524
Csa05g02544 619 SUPERFAMILY GroEL equatorial domain-like 80 593 IPR027413 -
Csa05g02544 619 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 30 600 - -
Csa05g02544 619 PRINTS 60kDa chaperonin signature 97 123 IPR001844 GO:0042026|GO:0140662
Csa05g02544 619 PRINTS 60kDa chaperonin signature 153 180 IPR001844 GO:0042026|GO:0140662
Csa05g02544 619 PRINTS 60kDa chaperonin signature 337 360 IPR001844 GO:0042026|GO:0140662
Csa05g02544 619 PRINTS 60kDa chaperonin signature 419 444 IPR001844 GO:0042026|GO:0140662
Csa05g02544 619 PRINTS 60kDa chaperonin signature 467 488 IPR001844 GO:0042026|GO:0140662
Csa05g02544 619 MobiDBLite consensus disorder prediction 21 48 - -
Csa05g02544 619 Gene3D GroEL 261 442 IPR027409 -
Csa05g02544 619 TIGRFAM GroEL: chaperonin GroL 72 598 IPR001844 GO:0042026|GO:0140662
Csa05g02544 619 Gene3D - 207 479 IPR027410 -
Csa05g02544 619 CDD GroEL 72 595 IPR001844 GO:0042026|GO:0140662
Csa05g02544 619 SUPERFAMILY GroEL apical domain-like 254 445 IPR027409 -
Csa05g02544 619 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 30 600 - -
Csa05g02544 619 Gene3D - 84 594 IPR027413 -
Csa05g02544 619 Coils Coil 408 428 - -
Csa05g02544 619 MobiDBLite consensus disorder prediction 21 74 - -
Csa05g02544 619 SUPERFAMILY GroEL-intermediate domain like 210 263 IPR027410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02544 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - csv:101209342 1149.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03042 Csa-Chr1:26498374 Csa05g02544 Csa-Chr5:26880403 0 dispersed
Csa05g02544 Csa-Chr5:26880403 Csa06g01216 Csa-Chr6:10284153 6.57E-170 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67