Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02551 ATGATTCAAATGGGAATTAGAATAAAAGTTTCCATTTTTCTCTTGTTGTTATGGAATTTTTCTGGAAATGGTTTGCTTACTGAAAAAGGTGTTAACTATGAAGTTCAAGCTTTGATGGCTATTAAAGCTGCTTTGAAAGACCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCATGTAGTTGGAGCATGATTACTTGTTCTTCAGAGAAGTTTGTCATTAGTTTAGGAGCTCCAAGTCAGAACTTGTCCGGTAGCCTGTCGCCGAGCATCGGAAATTTGACAAATCTTCAGTCTGTGCTTCTACAGGACAATAATATATCAGGAACAATTCCAATGGAGCTTGGGAACATACCTAGCCTTGACACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAAATTCCCACTTCTCTTTCTCATCTTAAGAGTCTTCAATATCTGAGACTAAACAACAACAGTCTTTCTGGGGCTATTCCTTCATCTTTGGCCAACATGACTCAGCTGGCATTGTTGGACCTATCTTTTAATAATCTGAGTGGCCCATTGCCCAGATTACTAGCTAAAACCTACAACCTTGCTGGGAATTCACTCATTTGCTCGCCTGGGTCAGAGCATAGCTGCAATGGAACTGCTCCACCTCTCTTATTTGCTGTCAATACATCTCAAAATTCACAACCTTCTGGGAGATCCAAGGGCCACAAATTAGCCTTAGCTTTTGGCTCAAGCCTTGGATGTGTTTTCCTGTTAACCATTGGGTTTGGCTTCTTTATTTGGTGGAGGCAACGACACAACCAGCAGATTTTCTTTGATGTTAATAATGATCAAAGATTTGAAGAAGTTTGCCTTGGGAATCTAAGGATTTTTCAGTTCAGAGAGCTTCAAGCCGCTACTAACAACTTCAGCAGTAAAAACTTGGTGGGAAAAGGTGGGTTTGGGAATGTTTACAAAGGGTATCTTCAAGATGGTACAATTATAGCTGTGAAAAGGTTAAAAGATGGAAATGCAATGAGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCCTAGCTGTGCACCGGAACCTCCTCCGTCTCTACGGATTCTGTATGACAACCACAGAAAGACTGTTGGTTTACCCCTATATGTCGAACGGCAGCGTTGCCTCTCGTCTCAAAGCGAAGCCAGCTCTGGATTGGAGCACCAGGAAAAGAATAGCACTGGGAGCAGCAAGAGGGTTACTGTATTTGCACGAGCAATGTGACCCAAAGATCATACACAGAGATGTCAAGGCTGCAAATATATTGCTTGATGATTATTGCGAGGCTGTGGTGGGAGATTTTGGACTGGCAAAGCTGTTGGATCATAGAGATTCACATGTAACAACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACTGGTCAATCTTCCGAGAAAACTGATGTGTTTGGATACGGAATTCTTCTTCTTGAGTTGATCACAGGACAGAGAGCTCTTGAATTTGGAAAAGCTGTTAATCAGAAAGGAGCGATGCTTGATTGGGTCAAGAAAATCCACCAAGAAAAGAAGCTTGAAATACTAGTTGATAAGGATCTAAGGAGCAATTACGACCGAATTGAGCTAGAAGAAATGGTTCAAGTAGCTCTCTTATGCACACAGTATCTTCCAACCACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCGGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGATACAGAGTCAATGAGTTCTCTTCGTCAGAGCGATATTCTGATCTTACAGATGACTCTTCCCTGCTTGCACAAGCCATGGAGCTTTCTGGACCGAGATAA 1872 42.52 MIQMGIRIKVSIFLLLLWNFSGNGLLTEKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWSMITCSSEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGTIPMELGNIPSLDTLDLSSNGFHGEIPTSLSHLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLLAKTYNLAGNSLICSPGSEHSCNGTAPPLLFAVNTSQNSQPSGRSKGHKLALAFGSSLGCVFLLTIGFGFFIWWRQRHNQQIFFDVNNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTIIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGYGILLLELITGQRALEFGKAVNQKGAMLDWVKKIHQEKKLEILVDKDLRSNYDRIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSERYSDLTDDSSLLAQAMELSGPR* 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26917973 26922665 - CsaV3_5G033700.1 Csa05g02551 530938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02551 623 ProSiteProfiles Protein kinase domain profile. 303 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02551 623 SMART serkin_6 303 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02551 623 SUPERFAMILY L domain-like 34 195 - -
Csa05g02551 623 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Csa05g02551 623 Pfam Protein kinase domain 304 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02551 623 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 11 623 - -
Csa05g02551 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 623 - -
Csa05g02551 623 Pfam Leucine rich repeat 121 181 IPR001611 GO:0005515
Csa05g02551 623 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Csa05g02551 623 Gene3D Phosphorylase Kinase; domain 1 271 379 - -
Csa05g02551 623 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Csa05g02551 623 Gene3D Transferase(Phosphotransferase) domain 1 380 592 - -
Csa05g02551 623 SUPERFAMILY Protein kinase-like (PK-like) 282 573 IPR011009 -
Csa05g02551 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01919 Csa-Chr1:16062733 Csa05g02551 Csa-Chr5:26917973 0 dispersed
Csa02g01758 Csa-Chr2:17156879 Csa05g02551 Csa-Chr5:26917973 0 dispersed
Csa05g02551 Csa-Chr5:26917973 Csa06g03712 Csa-Chr6:29681231 0 dispersed
Csa01g03101 Csa-Chr1:26973515 Csa05g02551 Csa-Chr5:26917973 7.64E-37 transposed
Csa02g01663 Csa-Chr2:15780377 Csa05g02551 Csa-Chr5:26917973 9.12E-164 transposed
Csa04g00492 Csa-Chr4:3226997 Csa05g02551 Csa-Chr5:26917973 4.08E-158 transposed
Csa04g00931 Csa-Chr4:6948285 Csa05g02551 Csa-Chr5:26917973 0 transposed
Csa05g01367 Csa-Chr5:14374418 Csa05g02551 Csa-Chr5:26917973 0 transposed
Csa06g00289 Csa-Chr6:2107583 Csa05g02551 Csa-Chr5:26917973 0 transposed
Csa07g00530 Csa-Chr7:3883580 Csa05g02551 Csa-Chr5:26917973 0 transposed
Csa07g00694 Csa-Chr7:4974916 Csa05g02551 Csa-Chr5:26917973 5.34E-40 transposed
Csa05g02551 Csa-Chr5:26917973 Csa05g03065 Csa-Chr5:30756982 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78277 PF00069 Pkinase 7.90E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02551 - - csv:101208127 1238.79