Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02558 ATGGCGTCCGTATCACCGGCGCCTTTTTCATCTCCGTCGCCGGCTTCTCCCTCCACTCCATCTCTGTCGCCTCCTGCCGCATCCAATTCCCCACCCAGTACTCCGTCACCATCTCCGCCGCAACAATCGCCTCCTTCGAATCAGTCTGACAACGCCACTCCTAGTTCATCTCCTCCGCCGCCGTCTCATCAACCATCTGCCACTTCACCTCCACCTACATCTGACACTCCCCCGCCATCAACACCTGCATTGTCTCCTCCGCCGCCTCCGACGGTTCCGCCGGCAACTCCATCACCAACTCCGCCCAATGCTCCACCCCCAACAACACCGGACCCTCCACCACCAGTAAGCTCCACTCCCCCAACGCCGTCTGATCCCCCACCAAATTCACCTCCACCTCCTGCAGCAGAGCCTCCTCAATCCCCTCCCCCACAATCATCAAAACCACCTGAAAATCCCCCTCCGCCGCCGCCACCACCATCACAAGCAAACCCGCCGGACAATCCATCACCACCGCCACAACCCATAAACCCACCTGAGAGTTCACCCCCACCCCCACCATCAGCACCTCCAGAAACCTCACCTCCCTCCCCAGCATCAATACCTCCTAGAAATTCACCGCCACCCCCAAGGCCTTCTCCCCCTCCCAGTGATCCCTCACCGTCAAGTCCTCCTCCCAATTCATCACTACCCCCATCTCCACCACCTCCGCCGTCGCGTCTTTCTCCTCCATTACCTTCTAAACCCCCAACATTGCCGTCGGGGAATCGTACGGGCGATGGTTCTGGTCCTAATGATGGAGGAGCAAATTCTAATTCCAACAGCAATGGAGGGATCAGTAGTGGGGGTGTGATTGCCATTGGTGTAGCGGCAGGAATTGTAGTGCTTTTCATAATTGGATTTGTTGTATGGTACATCAGAAAGCCAAGGAAAAATGATTCTGGGCGTGGAGGTTACATTATGCCATCCTCTCTGGGTTCCTCTCCTAAGTCGGAATCATCCCTTATGAAGGTCCATTCCTCAGTTCATCAAGACATACATGCCACCGGTAGTGGCAGTGGTGGAATATACACTCCAAGAGAGCCTGGTGGGGTGGGGAGTTCGAGGCCATTGTTTACATATGAAGAACTGTTCAAAGCAACAAATGCATTTTCTACTCAGAACCTCTTAGGAGAAGGAGGATTTGGTTCTGTTTATAAAGGATATCTTCCAGATGGAAGAGTGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGTCAAGGTGAGCTGGAATTCAAAGCTGAAGTCGAGATTATTGGTCGTGTTCACCACCGCCATTTGGTTTCTCTTGTGGGCTATTGTATTTCAGAACATCAAAGGTTGCTGGTCTATGATTACGTCTCTAACAATTCACTTTACTACCATCTTCATCTCAAAGGCAATGGTGAGCTCGTTCTGGAATGGGCAAAGCGCATTAAGATTGCAGCTGGTGCAGCCCGGGGCATTGCTTATCTTCATGAAGACTGTCATCCTCGAATTATCCACCGTGATATCAAATCCTCAAACATTCTTCTAGATGAAAACTTCGAAGCTCGAGTTTCAGACTTTGGGCTTGCCAAATTAGCTCTCGACGAACAAACTCATATAACAACCCGTGTTGTGGGAACTTTTGGATATGTTGCCCCTGAATATGCATCAAGTGGAAAGTTAACCGAGAGATCAGATGTATTTTCTTTTGGAGTTGTACTTCTCGAGCTGATTACCGGTCGAAAGGCTGTGGATGCATCCCAACCAATGGGGAACGAGAGCCTTGTCGAATGGGCTCGGCCTTTACTTAACCACGCACTCGACAATCAAGATTTCGAAACCCTGGTAGACCCAAGGCTTGAAAGGAACTACGACGAGAGTGAAATGTTGAGGATGATAGGAATAGCTGCTGCTTGCGTGCGCCACTCATCTGCCAAGAGACCGCAGATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCAACTGCAGATTTAAGTAATGGAATGAGATTTGGGGAGAGTCAAGGTTTCGACTCCGGTCAACAATCTGCCGAAATTAGATTTTTCCGAATGCTTGCGTTCGGTAACCAAGATTACAGTTCAGACTTTTATAGCCAAGGTAGCTCAAATGCCTGA 2142 50.37 MASVSPAPFSSPSPASPSTPSLSPPAASNSPPSTPSPSPPQQSPPSNQSDNATPSSSPPPPSHQPSATSPPPTSDTPPPSTPALSPPPPPTVPPATPSPTPPNAPPPTTPDPPPPVSSTPPTPSDPPPNSPPPPAAEPPQSPPPQSSKPPENPPPPPPPPSQANPPDNPSPPPQPINPPESSPPPPPSAPPETSPPSPASIPPRNSPPPPRPSPPPSDPSPSSPPPNSSLPPSPPPPPSRLSPPLPSKPPTLPSGNRTGDGSGPNDGGANSNSNSNGGISSGGVIAIGVAAGIVVLFIIGFVVWYIRKPRKNDSGRGGYIMPSSLGSSPKSESSLMKVHSSVHQDIHATGSGSGGIYTPREPGGVGSSRPLFTYEELFKATNAFSTQNLLGEGGFGSVYKGYLPDGRVVAVKELKIGGGQGELEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVSNNSLYYHLHLKGNGELVLEWAKRIKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVFSFGVVLLELITGRKAVDASQPMGNESLVEWARPLLNHALDNQDFETLVDPRLERNYDESEMLRMIGIAAACVRHSSAKRPQMGQVVRAFDSLATADLSNGMRFGESQGFDSGQQSAEIRFFRMLAFGNQDYSSDFYSQGSSNA* 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26969429 26974430 + CsaV3_5G033770.1 Csa05g02558 530945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02558 713 MobiDBLite consensus disorder prediction 10 44 - -
Csa05g02558 713 PRINTS Proline rich extensin signature 1 18 - -
Csa05g02558 713 PRINTS Proline rich extensin signature 24 40 - -
Csa05g02558 713 PRINTS Proline rich extensin signature 41 58 - -
Csa05g02558 713 PRINTS Proline rich extensin signature 61 86 - -
Csa05g02558 713 ProSitePatterns Protein kinases ATP-binding region signature. 390 412 IPR017441 GO:0005524
Csa05g02558 713 Gene3D Phosphorylase Kinase; domain 1 365 459 - -
Csa05g02558 713 CDD STKc_IRAK 390 662 - -
Csa05g02558 713 Gene3D Transferase(Phosphotransferase) domain 1 460 673 - -
Csa05g02558 713 ProSiteProfiles Protein kinase domain profile. 384 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02558 713 SMART serkin_6 384 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02558 713 MobiDBLite consensus disorder prediction 1 274 - -
Csa05g02558 713 PANTHER OS01G0253100 PROTEIN 274 706 IPR045271 GO:0004714|GO:0006468
Csa05g02558 713 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK10 274 706 - -
Csa05g02558 713 MobiDBLite consensus disorder prediction 54 251 - -
Csa05g02558 713 SUPERFAMILY Protein kinase-like (PK-like) 367 663 IPR011009 -
Csa05g02558 713 MobiDBLite consensus disorder prediction 252 274 - -
Csa05g02558 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 506 518 IPR008271 GO:0004672|GO:0006468
Csa05g02558 713 Pfam Protein kinase domain 385 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02558 Csa-Chr5:26969429 Csa05g02336 Csa-Chr5:25732365 1.85E-166 dispersed
Csa03g04090 Csa-Chr3:35841358 Csa05g02558 Csa-Chr5:26969429 3.83E-92 transposed
Csa06g01929 Csa-Chr6:17387432 Csa05g02558 Csa-Chr5:26969429 5.11E-70 transposed
Csa07g00338 Csa-Chr7:2518563 Csa05g02558 Csa-Chr5:26969429 1.84E-71 transposed
Csa05g02558 Csa-Chr5:26969429 Csa05g03083 Csa-Chr5:30852236 1.11E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78278 PF00069 Pkinase 1.70E-43 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02558 - - csv:101215813 837.795