Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g02558 | ATGGCGTCCGTATCACCGGCGCCTTTTTCATCTCCGTCGCCGGCTTCTCCCTCCACTCCATCTCTGTCGCCTCCTGCCGCATCCAATTCCCCACCCAGTACTCCGTCACCATCTCCGCCGCAACAATCGCCTCCTTCGAATCAGTCTGACAACGCCACTCCTAGTTCATCTCCTCCGCCGCCGTCTCATCAACCATCTGCCACTTCACCTCCACCTACATCTGACACTCCCCCGCCATCAACACCTGCATTGTCTCCTCCGCCGCCTCCGACGGTTCCGCCGGCAACTCCATCACCAACTCCGCCCAATGCTCCACCCCCAACAACACCGGACCCTCCACCACCAGTAAGCTCCACTCCCCCAACGCCGTCTGATCCCCCACCAAATTCACCTCCACCTCCTGCAGCAGAGCCTCCTCAATCCCCTCCCCCACAATCATCAAAACCACCTGAAAATCCCCCTCCGCCGCCGCCACCACCATCACAAGCAAACCCGCCGGACAATCCATCACCACCGCCACAACCCATAAACCCACCTGAGAGTTCACCCCCACCCCCACCATCAGCACCTCCAGAAACCTCACCTCCCTCCCCAGCATCAATACCTCCTAGAAATTCACCGCCACCCCCAAGGCCTTCTCCCCCTCCCAGTGATCCCTCACCGTCAAGTCCTCCTCCCAATTCATCACTACCCCCATCTCCACCACCTCCGCCGTCGCGTCTTTCTCCTCCATTACCTTCTAAACCCCCAACATTGCCGTCGGGGAATCGTACGGGCGATGGTTCTGGTCCTAATGATGGAGGAGCAAATTCTAATTCCAACAGCAATGGAGGGATCAGTAGTGGGGGTGTGATTGCCATTGGTGTAGCGGCAGGAATTGTAGTGCTTTTCATAATTGGATTTGTTGTATGGTACATCAGAAAGCCAAGGAAAAATGATTCTGGGCGTGGAGGTTACATTATGCCATCCTCTCTGGGTTCCTCTCCTAAGTCGGAATCATCCCTTATGAAGGTCCATTCCTCAGTTCATCAAGACATACATGCCACCGGTAGTGGCAGTGGTGGAATATACACTCCAAGAGAGCCTGGTGGGGTGGGGAGTTCGAGGCCATTGTTTACATATGAAGAACTGTTCAAAGCAACAAATGCATTTTCTACTCAGAACCTCTTAGGAGAAGGAGGATTTGGTTCTGTTTATAAAGGATATCTTCCAGATGGAAGAGTGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGTCAAGGTGAGCTGGAATTCAAAGCTGAAGTCGAGATTATTGGTCGTGTTCACCACCGCCATTTGGTTTCTCTTGTGGGCTATTGTATTTCAGAACATCAAAGGTTGCTGGTCTATGATTACGTCTCTAACAATTCACTTTACTACCATCTTCATCTCAAAGGCAATGGTGAGCTCGTTCTGGAATGGGCAAAGCGCATTAAGATTGCAGCTGGTGCAGCCCGGGGCATTGCTTATCTTCATGAAGACTGTCATCCTCGAATTATCCACCGTGATATCAAATCCTCAAACATTCTTCTAGATGAAAACTTCGAAGCTCGAGTTTCAGACTTTGGGCTTGCCAAATTAGCTCTCGACGAACAAACTCATATAACAACCCGTGTTGTGGGAACTTTTGGATATGTTGCCCCTGAATATGCATCAAGTGGAAAGTTAACCGAGAGATCAGATGTATTTTCTTTTGGAGTTGTACTTCTCGAGCTGATTACCGGTCGAAAGGCTGTGGATGCATCCCAACCAATGGGGAACGAGAGCCTTGTCGAATGGGCTCGGCCTTTACTTAACCACGCACTCGACAATCAAGATTTCGAAACCCTGGTAGACCCAAGGCTTGAAAGGAACTACGACGAGAGTGAAATGTTGAGGATGATAGGAATAGCTGCTGCTTGCGTGCGCCACTCATCTGCCAAGAGACCGCAGATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCAACTGCAGATTTAAGTAATGGAATGAGATTTGGGGAGAGTCAAGGTTTCGACTCCGGTCAACAATCTGCCGAAATTAGATTTTTCCGAATGCTTGCGTTCGGTAACCAAGATTACAGTTCAGACTTTTATAGCCAAGGTAGCTCAAATGCCTGA | 2142 | 50.37 | MASVSPAPFSSPSPASPSTPSLSPPAASNSPPSTPSPSPPQQSPPSNQSDNATPSSSPPPPSHQPSATSPPPTSDTPPPSTPALSPPPPPTVPPATPSPTPPNAPPPTTPDPPPPVSSTPPTPSDPPPNSPPPPAAEPPQSPPPQSSKPPENPPPPPPPPSQANPPDNPSPPPQPINPPESSPPPPPSAPPETSPPSPASIPPRNSPPPPRPSPPPSDPSPSSPPPNSSLPPSPPPPPSRLSPPLPSKPPTLPSGNRTGDGSGPNDGGANSNSNSNGGISSGGVIAIGVAAGIVVLFIIGFVVWYIRKPRKNDSGRGGYIMPSSLGSSPKSESSLMKVHSSVHQDIHATGSGSGGIYTPREPGGVGSSRPLFTYEELFKATNAFSTQNLLGEGGFGSVYKGYLPDGRVVAVKELKIGGGQGELEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVSNNSLYYHLHLKGNGELVLEWAKRIKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVFSFGVVLLELITGRKAVDASQPMGNESLVEWARPLLNHALDNQDFETLVDPRLERNYDESEMLRMIGIAAACVRHSSAKRPQMGQVVRAFDSLATADLSNGMRFGESQGFDSGQQSAEIRFFRMLAFGNQDYSSDFYSQGSSNA* | 714 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 26969429 | 26974430 | + | CsaV3_5G033770.1 | Csa05g02558 | 530945 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g02558 | 713 | MobiDBLite | consensus disorder prediction | 10 | 44 | - | - | |
Csa05g02558 | 713 | PRINTS | Proline rich extensin signature | 1 | 18 | - | - | |
Csa05g02558 | 713 | PRINTS | Proline rich extensin signature | 24 | 40 | - | - | |
Csa05g02558 | 713 | PRINTS | Proline rich extensin signature | 41 | 58 | - | - | |
Csa05g02558 | 713 | PRINTS | Proline rich extensin signature | 61 | 86 | - | - | |
Csa05g02558 | 713 | ProSitePatterns | Protein kinases ATP-binding region signature. | 390 | 412 | IPR017441 | GO:0005524 | |
Csa05g02558 | 713 | Gene3D | Phosphorylase Kinase; domain 1 | 365 | 459 | - | - | |
Csa05g02558 | 713 | CDD | STKc_IRAK | 390 | 662 | - | - | |
Csa05g02558 | 713 | Gene3D | Transferase(Phosphotransferase) domain 1 | 460 | 673 | - | - | |
Csa05g02558 | 713 | ProSiteProfiles | Protein kinase domain profile. | 384 | 662 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g02558 | 713 | SMART | serkin_6 | 384 | 663 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g02558 | 713 | MobiDBLite | consensus disorder prediction | 1 | 274 | - | - | |
Csa05g02558 | 713 | PANTHER | OS01G0253100 PROTEIN | 274 | 706 | IPR045271 | GO:0004714|GO:0006468 | |
Csa05g02558 | 713 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK10 | 274 | 706 | - | - | |
Csa05g02558 | 713 | MobiDBLite | consensus disorder prediction | 54 | 251 | - | - | |
Csa05g02558 | 713 | SUPERFAMILY | Protein kinase-like (PK-like) | 367 | 663 | IPR011009 | - | |
Csa05g02558 | 713 | MobiDBLite | consensus disorder prediction | 252 | 274 | - | - | |
Csa05g02558 | 713 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 506 | 518 | IPR008271 | GO:0004672|GO:0006468 | |
Csa05g02558 | 713 | Pfam | Protein kinase domain | 385 | 655 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g02558 | Csa-Chr5:26969429 | Csa05g02336 | Csa-Chr5:25732365 | 1.85E-166 | dispersed | |
Csa03g04090 | Csa-Chr3:35841358 | Csa05g02558 | Csa-Chr5:26969429 | 3.83E-92 | transposed | |
Csa06g01929 | Csa-Chr6:17387432 | Csa05g02558 | Csa-Chr5:26969429 | 5.11E-70 | transposed | |
Csa07g00338 | Csa-Chr7:2518563 | Csa05g02558 | Csa-Chr5:26969429 | 1.84E-71 | transposed | |
Csa05g02558 | Csa-Chr5:26969429 | Csa05g03083 | Csa-Chr5:30852236 | 1.11E-173 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78278 | PF00069 | Pkinase | 1.70E-43 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g02558 | - | - | csv:101215813 | 837.795 |