Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02560 ATGGGCGGTGGCAGGAGGAGAAAGCTGCATTTTAGCAAGATCTACTCGTTTGCATGTGGGAAAGCTTCTTTAAAGGATGATCATTCACAACTTGGGGGTCCGGGGTTTTCTCGAGTTGTTTTCTGTAACGAACCAGAGTGTTTTGAGGCAGAAATTCGAAACTACATAGACAATCGTATTAGTACTACTAAGTATACTCTAGCTACTTTCCTGCCTAAGTCATTGTTTGAGCAATTCAGGAGGGTGGCCAATTTCTATTTTTTGGTCAGTGGGATTCTCGCTTTTACTCCTCTTGCTCCTTACACGGCTGTCAGTGCGATCATCCCTCTTATTCTTGTCATTTCGGCCACAATGATCAAAGAAGGGATTGAGGATTGGAGGCGGAAAAAACAGGATATTGAGGTTAACAATAGAAAGGTTAAAGTGCATCAAGGTGAAGGAGTTTTTGATCACATAGAGTGGAAAAATCTTAGGGTGGGTGATATTGTGAGAGTGGAGAAGGATGAATTCTTTCCAGCAGATATTATATTGCTTTCATCCAGTTATGAGGATGCAATCTGCTATGTTGAGACAATGAACCTTGATGGTGAGACAAATTTGAAACTAAAACAAGCATTGGAGGTGACTTCACATATGAACGAGGATTCTATGTTCAACAGCTTCAAGGCTATCATAAAATGTGAGGATCCAAATGCAAATTTGTACAGTTTTGTTGGTAGTATGGAGTTGGAAGAGCAACAATATCCTCTATCTCCTCAACAACTACTCCTTCGAGACTCTAAACTCCGGAATACAGATTATATATATGGGGTGGCTGTCTTCACTGGTCGTGACACAAAAGTTATTCAAAATTCTACGGATCCACCTTCAAAGAGAAGCAAGGTTGAGAGGAAAATGGATAAAATTATATATATTTTGTTCTGTCTTCTATTTTTTCTTGCTCTTGTAGGATCTATATTTTTTGGCTTTGTGACTGACGATGATTTGGAAAATGGGAGAATGAAGAGATGGTATCTCAGGCCTGATGATGCCAGAATTTTCTTTGATCCAAAAAGGGCTCCAATAGCTGCAGTTTTCCATTTTCTTACGGCACTGATGTTATATAACTACTTCATTCCAATTTCACTGTATGTATCAATAGAAATTGTCAAAGTTCTTCAGAGCATATTTATCAATCAAGATATTAATATGTATTATGAAGAAGCTAACAAACCTGCTCGTGCGCGCACCTCAAATTTGAATGAAGAACTTGGTCAAGTCGATACAATACTCTCTGACAAGACTGGAACACTGACCTGTAATTCAATGGAGTTCATTAAGTGTTCTATTGCAGGGAGGGCTTATGGACAGGGTTTCACAGAGGTAGAAAGGGCTATAGGTAAACAAAAGGATTCACCTCTGCATGAGGCTACCAACGGGGTGAATCACCATGAGGATGGCAATGATAAAGCTTCACATATCAAGGGCTTCAATTTTAAGGATGTTAGGATTATGAATGGGAATTGGGTTAACGAGCCTCATGCAAATGTCATTCAAATGTTTTTCCGTCTTCTTGCAACTTGTCATACAGCAATACCTGAAATCAATGAGGATAATGGAGAGGTTTCTTATGAGGCTGAATCTCCAGATGAAGCAGCATTTGTGATTGCAGCTAGAGAACTTGGCTTTGAGTTCTACAAAAGAACACAGACAAGTATAGCACTCCATGAATTTGATCCTTCATTAGGCAAGAAAGTTGATAGGACATATAAACTGCTGCATGTTTTGGAGTTTAATAGCTCAAGAAAGCGGATGTCTGTTATAATAAGAGATGAGGAGGATAAAATATTATTATTCTGTAAAGGTGCAGACAGTATCATGTTTGAAAGGCTTGGAAAGAATGGAAGGAAGTTTGAAGAGGAGACCAAGGAACATGTCAATGAGTATGCTGATGCGGGATTGAGGACTTTGATACTTGCCTATCGTGAGCTTGAAGAGGAAGAATTCAGAGAATTTGACAACGAGTTCATGAAGGCCAAAAGTTCTGTTAGTGCAGATCGAGAATCATTGATTGAGAAAGTAACTGACAAAATCGAAAGGAATCTAATTCTTCTTGGCGCCACTGCAGTTGAGGACAAGCTTCAAAATGGGGTTCCTGAGTGCATTGACAAGCTTGCTCAGGCGGGAATTAAGATTTGGGTTTTAACCGGGGACAAAATGGAGACTGCCATTAATATTGGTTTTGCCTGTAGCTTACTACGACAAGATATGAAGCAAATTGTTATTACTCTGGAGTCATCAGAAATTCAGGCTATAGAAAAGACAGGGGACAAGGCTTCTATAATCAAGGCATCAATGCAATGCGTCCTTGATCAAATTACTCAAGGGAGAGCTCAGATCACTTCACCAAATGGGTTATCTGAAGCATTTGCATTAATTATTGATGGAAAGTCACTTTCTTATGCTTTAGAGGACAGTATTAAGGCATTGTTTCTTGAGGTAGCGACACATTGTGCTTCTGTTATTTGCTGCCGTTCATCTCCAAAACAGAAGGCACTGGTGACAAGGTTGGTTAAATCTGGAACACGGAAAACAACTTTAGCTATTGGTGATGGTGCCAATGATGTAGGGATGCTTCAAGAAGCTGACATTGGAGTGGGCATTAGTGGTGCGGAAGGAATGCAGGCCGTTATGTCAAGTGATGTTGCAATAGCACAGTTTAAATTCTTAGAGCAACTGCTTCTTGTGCATGGACATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTTTTCTATAAGAATATTACTTTTGGTTTTACCATATTCCTATACGAAGCATTCACATCATTCTCTGGGCAACCTATATATAATGATTGGTTTTTATCACTTTACAATGTTTTCTTCTCGTCGCTTCCGGTGGTAGCTTTGGGAGTTTTTGATCAGGATGTATCTGCAAGACTCTGCCTCCAGTTTCCTCTCTTATACCAACAAGGGGTGCAGAATGTTCTTTTCAGCTGGCTCCGAATACTCAGTTGGATGTTTAATGGATTGTGCAGTGCCGTGATCATTTTCATCCTATGCACTAAATCACTTGAGCATCAGGCGTTCAACTCTGATGGAAAAACTGCAGGGCGAGATATTCTGGGTGCAACAATGTACTCATGTGTTGTTTGGGTTGTAAACTTGCAAATGGCACTCGCTGTTAGTTACTTCACCTTGATACAACATCTTTTTATCTGGGGTTCCATTTCGATTTGGTACATTTTTCTCCTGATCTATGGATCCATGACCCCCACCTTTTCGACCAATGCTTATAAGATCTTCATCGAAGTCCTTGCCCCTGGCCCTTCCTACTGGCTCGTGCTTCTATTTGTGGTCATCTCAACACTCATTCCGTACTTCTCCTACACAGCTATACAGACTAGGTTCCTTCCCATGTATCATCAATTGATTTTATGGATTAGGAATGAAGGGCAACTAGACAACCAAGAGTACTGTAGTATTTTGCGGAACACTTCCACTTTCCGATCAACGAGTGTAGGTTCCACTGCACGGTTAGCAGCCAAAAGGAGCAAATTGAAAGAGAGAAACAAGAATGCTACTTGA 3591 40.24 MGGGRRRKLHFSKIYSFACGKASLKDDHSQLGGPGFSRVVFCNEPECFEAEIRNYIDNRISTTKYTLATFLPKSLFEQFRRVANFYFLVSGILAFTPLAPYTAVSAIIPLILVISATMIKEGIEDWRRKKQDIEVNNRKVKVHQGEGVFDHIEWKNLRVGDIVRVEKDEFFPADIILLSSSYEDAICYVETMNLDGETNLKLKQALEVTSHMNEDSMFNSFKAIIKCEDPNANLYSFVGSMELEEQQYPLSPQQLLLRDSKLRNTDYIYGVAVFTGRDTKVIQNSTDPPSKRSKVERKMDKIIYILFCLLFFLALVGSIFFGFVTDDDLENGRMKRWYLRPDDARIFFDPKRAPIAAVFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDINMYYEEANKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGRAYGQGFTEVERAIGKQKDSPLHEATNGVNHHEDGNDKASHIKGFNFKDVRIMNGNWVNEPHANVIQMFFRLLATCHTAIPEINEDNGEVSYEAESPDEAAFVIAARELGFEFYKRTQTSIALHEFDPSLGKKVDRTYKLLHVLEFNSSRKRMSVIIRDEEDKILLFCKGADSIMFERLGKNGRKFEEETKEHVNEYADAGLRTLILAYRELEEEEFREFDNEFMKAKSSVSADRESLIEKVTDKIERNLILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQDMKQIVITLESSEIQAIEKTGDKASIIKASMQCVLDQITQGRAQITSPNGLSEAFALIIDGKSLSYALEDSIKALFLEVATHCASVICCRSSPKQKALVTRLVKSGTRKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDVAIAQFKFLEQLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYEAFTSFSGQPIYNDWFLSLYNVFFSSLPVVALGVFDQDVSARLCLQFPLLYQQGVQNVLFSWLRILSWMFNGLCSAVIIFILCTKSLEHQAFNSDGKTAGRDILGATMYSCVVWVVNLQMALAVSYFTLIQHLFIWGSISIWYIFLLIYGSMTPTFSTNAYKIFIEVLAPGPSYWLVLLFVVISTLIPYFSYTAIQTRFLPMYHQLILWIRNEGQLDNQEYCSILRNTSTFRSTSVGSTARLAAKRSKLKERNKNAT* 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26977036 26985427 - CsaV3_5G033790.1 Csa05g02560 530947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02560 1196 MobiDBLite consensus disorder prediction 463 482 - -
Csa05g02560 1196 SFLD p-type atpase 408 913 IPR044492 -
Csa05g02560 1196 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 55 1146 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Csa05g02560 1196 Pfam Phospholipid-translocating ATPase N-terminal 40 106 IPR032631 -
Csa05g02560 1196 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Csa05g02560 1196 PRINTS P-type cation-transporting ATPase superfamily signature 862 881 - -
Csa05g02560 1196 Pfam Phospholipid-translocating P-type ATPase C-terminal 890 1140 IPR032630 -
Csa05g02560 1196 SFLD Haloacid Dehalogenase 408 913 - -
Csa05g02560 1196 Gene3D - 699 902 IPR023214 -
Csa05g02560 1196 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1190 - -
Csa05g02560 1196 Coils Coil 1178 1196 - -
Csa05g02560 1196 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1190 - -
Csa05g02560 1196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 431 699 IPR023299 GO:0000166
Csa05g02560 1196 Gene3D - 115 286 - -
Csa05g02560 1196 Gene3D - 540 698 IPR023299 GO:0000166
Csa05g02560 1196 Pfam Cation transport ATPase (P-type) 520 625 - -
Csa05g02560 1196 SUPERFAMILY HAD-like 419 917 IPR036412 -
Csa05g02560 1196 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1140 IPR023298 -
Csa05g02560 1196 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Csa05g02560 1196 Pfam E1-E2 ATPase 136 359 - -
Csa05g02560 1196 SUPERFAMILY Calcium ATPase, transduction domain A 140 283 IPR008250 -
Csa05g02560 1196 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 830 944 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa05g02560 1196 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 106 220 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa05g02560 1196 CDD P-type_ATPase_APLT_Dnf-like 57 1022 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02389 Csa-Chr5:26049570 Csa05g02560 Csa-Chr5:26977036 0 dispersed
Csa05g02560 Csa-Chr5:26977036 Csa07g02379 Csa-Chr7:21930097 0 dispersed
Csa02g00872 Csa-Chr2:8123011 Csa05g02560 Csa-Chr5:26977036 0 transposed
Csa01g00638 Csa-Chr1:4052892 Csa05g02560 Csa-Chr5:26977036 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02560 K01530 - csv:101207148 2336.22