Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02561 ATGTACAACACTTATGTCAGCTCAGCTGTATGTTCTATTCGGAGTAAAGGGCCTCTTTCCCATTGCTTTAATGAGCGTCCCATCTTCTTAAATGAAAGATGTAATGGAAACCCATTGAATCTTCCATCGTCATCATGTTGTTCTTGTTGTGTTTGTTATACATTTCCAACCTACAGAGTGCCTGTAGGCTCTAGTATTTTCTATGGGCCGAGGCAATCCACCCTGCTTCAATGGTCGATCTCTAGGAGATTGATGATGGGTGGCCGAAACCGGTTCTGTTACACGCTTCCGGAATATGGGCGTGTTCTGGATTGTTATGAGGTTCCTTTTTCTGTAAGTGATGGTAGGACTTGTCATTGTAGTGAGGGAAGGAGATATAGAAGATGTTGTATGGCTTCTGATAGTGATTGTGAATTTGACAAATCGGATGGATTTGATGAAGAGGACATTGCTGAGGCAATGATCAGTTTGATAAGGGAGGGCTTTGGAAGCCAGGAAAAAATTAAGTCATCTAAGAGACTAGAAGTGGGAAACCAAAAAAAATACGGAGCGAAGGAGAGAAATTTAAGTTCATTGAGACGAGTAGAACTGGAGAAAAAAGTGAGAAGAGGCGTCGAGGAGAAAACGGTAAGTTCAATTGAAAAGAAAAGAGTAGATAGAAAAAGAGAGAGTAACCACCAGCAAGAAAGAGAAGAGAGGAAAAACAATGAGTTTGGTTCTTTAAATAGTAAACATAACAATAAAGTCGGATCAATGGCAGTTGAGTTGAGGAAAGATGGATATGGATTGATTGGTGATCAATTAGTTCATTCAAGAGCTGATAGACAGAGTTTAAGAAAAGAAGGGTCCACTTGTTCATCTTATTATTCACTCTCCTCCTCTGGGGATATTGAGAGTGATGCTGAAGTTGAAGACAAGAAGGTACAATTTGTTGAAGAATCGTCCAGTGGGTATAGATACGACTCTTTGAGTGATGTGGGAGAAAAATTAGATGGGCAGGTCAAGGAAACATTCAGGAGGCAAGCGGACGATGAGAGGGGACGAGAAGAGGAAACAGTAGTCCATGATACTACAGTTGGAAATAATGCCAATTGGCACGTGAGGAAGAACTCAGAGAATGAACTTACTGAAATATCAACAACAGTAACATCCTCCACAAGTGGAACCTCTGAGATGAACTCAAGATTGTCAAGGGCCAGGGAAAGTGGTTCTGTAAGTACTTCAAGCACGAAGAAGTTTGTTGACAAGGAAGAGGAATTGAAAAAAGCTATGACTTTGAATGAGGAATCAAAAAAATATGATGTATCAGGTAAGAAAGTGGGTGGTGTGTCTATAAATGAAGGGAAAAAACGTACAGAAGTATCAGAAATAAGCCACAGTAGTGCAGAAGAAATTTCTCGTTCTCATAAAAGACTAACCATTAAGAATGAAAACCTAGAATTAGATGCAAATCTAATCTCGAAAGCAAGCAACAACAATCATGGAACTGGTCGTCCTGTCCTTCAAGAAAAAAGTTCAAGACGAAGTTCATCGTTTCAACAACTTTTGGGAGTTTCAGAAAATAGGAAAACTGAGAGAGAAAGGATCTCTATCTCTCAGCAGACAAGCCAGTCTGATGCAAGTGAAAGTACAGGTCTCCATGTATCTTCTAATCAGGAGGTTGAAGAAGGATATCATCAAATAGAAAACCATCCCACTGGAGAAGTGAATTCGAGACAAAAACTTCTTCATCTTGGTGTTATATCAGTAATCAAAGAAGGCAATACCAACACCTCTGTTTCAAGTTCTGAAATTAGAACACAAAATGAGGAACAAAATGCAGCATTGGTTAAAACATCAAATTTTGTGGCTAAAGACATAAAATCTTCGACAGATCAGAAAGCTTCTCAGAGAGTTATTTCCAGAAAAGGTTCCCGAGATGGCTCTTCAGTGGTTCATGGCACTGATAAAATGTCTGCTACACATTCTGAAAAAATATTTGAAAATAGAATTTTCAAGCAAGAAACTAATAAATCAGTAGTGGAGAAAACTGTCAAGGAAACCATAATAAGACATGGTCAAAATAATGATCGTGTGGTGCAAACTGAATCAGGAAAAGAGTCTAAAAATCATGAAGAAAAACTAAAAGTTCAAGGATCCATTAATTTAAGTTCCCAAAGTAGTTATCAAGGGATTGGTGTGAATATTGATGAAAATAAAAGGTCACAGGCAGTATTAATGCCTCCTCCATCCCAGCTTGCAGCTAGAGATTCATTGCGAACAGATTCTACTAGTGAAATGGGCCAAGTAGTTTCCAGAAGAACATCAGGAAGCAGTTCAGGTGCTTCTTACATGCAGTCAGGAGGAAGTCCAGCTTTGGACCGGAAATCCTACCGAGGAGGTGGGGCAGATGAGAGTATTGAGGAACCTGTGTATGTTATCACTCCTGATGATACTCTAGGTTCTGCTGACCGTTTAGAGAGATCATCTGCACAGTTTGTTGGTGAGTTCATGGAGAAGTCCAGAAATGAACTCTTAATTTCTGAAACCCATGCAGAGAGAAATACCTCCGAGGTTGATTTACTACATGAAGAGCAGGATGGAGAAAGTGATTTGGTAGATTATCAAAGGAAGGACCATGACTCAAGGCTCTCGTCTGGGAGTTCTGGAACCAAGGGTCCTCCTGATGAAATGTGGCATGTAATGGACTCAACTACCGAGCAGCCTCCCAAAACTGATGATCCTGAGATTAGTGCACACAGTGAGAACGCAATTGTCAAGAGAAGTGGCAAATCCTTGTGGAATGTCATTTCAGACATAGTTCGTCTCCGTTGGAATTCACGCACTGAAACCTCTGAGTCAGCTTTAAGATCAGGTGGAAGAAATTCACCAAACGAGTCTGTTAGTAATGAAACATGGTTTTCTGGCCGTGAACACGAGGAGAGCGACAATACAAAAATGGGAAGAACCACAGTTTCTGAATTCACTTCATTGGATCAGTTGGAAGAACCAAATCTTTCTGCCCAAGGCCAAGATTTATCTGATGATAAGAAAGTGAAAAGCAAATACTATGAAGTAGATACTCCATCTTCCTCAAATACAGTGGAGCCCAAGCCATCAGGTGGGACTTTGTTGGTTTCTGGAGAAGCGATTTTAACAGACGGTACGAAGGTTGAAGTTATTTCTTCTGGTTTGGATATAGAACCATCATCCATACCACTGTCTACCCAAGGCATAAAAGAATCTCCCACGATTCAAGAAATGTCTCAAAGTGGTAAAACCGAAGCCTTTGCAAGCAGCTCTGCAGATCAGTTGGGGCATTCTTTTAGTGCTAAATTATCAGAGACATCAACAACTGAAACCAAGGATGGGGAAGTGAAACAAAGGAAGCTTCAAAGAAACAAGCAAGTTCTAAAAGATCGGTTTGATGAATGGGAAGAAGCATACTTACTTGAAACTGAGCAGCGAAAAATTGATGAAATGTTTATGAGGGAAGCTCTAGCTGAAGCCAAGAAGGCTGCTGATACTTGGGAAGTGCCTGTTGGAGCAGTGTTGGTGAAACACGGTAAAATTATTGCTCGTGGCTGCAACCTGGTCGAAGAGTTGCGAGATTCTACAGCCCATGCCGAAATGTTTTGTATTCGTGAGGCTTCAAAGCAATTAAAGACATGGAGGCTTGCTGAGACAACTCTCTACGTGACACTTGAGCCATGCCCTATGTGTGCTGGAGCGATACTACAGGCACGGATCGAGAATCTTGTATGGGGAGCACCAAACAAGCTTCTTGGAGCTGATGGCAGCTGGATCAGACTTTTTCCCAATGGTGGAGAGGGGAATATCTCAGAACAGTCCGAGAAGCCTGCTGCACCCGTCCACCCATTCCACCCAAAAATGACTATTCGACGAGGTGTATTAGCATCAGAATGTGCAGATGTAATGCAACAATTCTTTCAGCTAAGGAGAAGAAAGAAGCAAAAGAAAGAAAACACTCCACCCCTAGCCATTGCCCATCATCCATCTAAATTTCTTACTAAGATGCATAATATCTTCCACATATTGTTCTGTTTGTAA 4050 41.01 MYNTYVSSAVCSIRSKGPLSHCFNERPIFLNERCNGNPLNLPSSSCCSCCVCYTFPTYRVPVGSSIFYGPRQSTLLQWSISRRLMMGGRNRFCYTLPEYGRVLDCYEVPFSVSDGRTCHCSEGRRYRRCCMASDSDCEFDKSDGFDEEDIAEAMISLIREGFGSQEKIKSSKRLEVGNQKKYGAKERNLSSLRRVELEKKVRRGVEEKTVSSIEKKRVDRKRESNHQQEREERKNNEFGSLNSKHNNKVGSMAVELRKDGYGLIGDQLVHSRADRQSLRKEGSTCSSYYSLSSSGDIESDAEVEDKKVQFVEESSSGYRYDSLSDVGEKLDGQVKETFRRQADDERGREEETVVHDTTVGNNANWHVRKNSENELTEISTTVTSSTSGTSEMNSRLSRARESGSVSTSSTKKFVDKEEELKKAMTLNEESKKYDVSGKKVGGVSINEGKKRTEVSEISHSSAEEISRSHKRLTIKNENLELDANLISKASNNNHGTGRPVLQEKSSRRSSSFQQLLGVSENRKTERERISISQQTSQSDASESTGLHVSSNQEVEEGYHQIENHPTGEVNSRQKLLHLGVISVIKEGNTNTSVSSSEIRTQNEEQNAALVKTSNFVAKDIKSSTDQKASQRVISRKGSRDGSSVVHGTDKMSATHSEKIFENRIFKQETNKSVVEKTVKETIIRHGQNNDRVVQTESGKESKNHEEKLKVQGSINLSSQSSYQGIGVNIDENKRSQAVLMPPPSQLAARDSLRTDSTSEMGQVVSRRTSGSSSGASYMQSGGSPALDRKSYRGGGADESIEEPVYVITPDDTLGSADRLERSSAQFVGEFMEKSRNELLISETHAERNTSEVDLLHEEQDGESDLVDYQRKDHDSRLSSGSSGTKGPPDEMWHVMDSTTEQPPKTDDPEISAHSENAIVKRSGKSLWNVISDIVRLRWNSRTETSESALRSGGRNSPNESVSNETWFSGREHEESDNTKMGRTTVSEFTSLDQLEEPNLSAQGQDLSDDKKVKSKYYEVDTPSSSNTVEPKPSGGTLLVSGEAILTDGTKVEVISSGLDIEPSSIPLSTQGIKESPTIQEMSQSGKTEAFASSSADQLGHSFSAKLSETSTTETKDGEVKQRKLQRNKQVLKDRFDEWEEAYLLETEQRKIDEMFMREALAEAKKAADTWEVPVGAVLVKHGKIIARGCNLVEELRDSTAHAEMFCIREASKQLKTWRLAETTLYVTLEPCPMCAGAILQARIENLVWGAPNKLLGADGSWIRLFPNGGEGNISEQSEKPAAPVHPFHPKMTIRRGVLASECADVMQQFFQLRRRKKQKKENTPPLAIAHHPSKFLTKMHNIFHILFCL* 1350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26993878 27000174 + CsaV3_5G033800.1 Csa05g02561 530948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02561 1349 MobiDBLite consensus disorder prediction 621 648 - -
Csa05g02561 1349 MobiDBLite consensus disorder prediction 966 980 - -
Csa05g02561 1349 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 901 1339 - -
Csa05g02561 1349 Pfam MafB19-like deaminase 1153 1252 IPR028883 GO:0002100|GO:0008251
Csa05g02561 1349 MobiDBLite consensus disorder prediction 942 1034 - -
Csa05g02561 1349 MobiDBLite consensus disorder prediction 621 637 - -
Csa05g02561 1349 SUPERFAMILY Cytidine deaminase-like 1135 1316 IPR016193 GO:0003824
Csa05g02561 1349 MobiDBLite consensus disorder prediction 749 780 - -
Csa05g02561 1349 Hamap tRNA-specific adenosine deaminase [tadA]. 1156 1314 IPR028883 GO:0002100|GO:0008251
Csa05g02561 1349 MobiDBLite consensus disorder prediction 842 878 - -
Csa05g02561 1349 MobiDBLite consensus disorder prediction 1065 1094 - -
Csa05g02561 1349 CDD nucleoside_deaminase 1168 1263 - -
Csa05g02561 1349 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1150 1272 IPR002125 -
Csa05g02561 1349 MobiDBLite consensus disorder prediction 382 410 - -
Csa05g02561 1349 MobiDBLite consensus disorder prediction 487 548 - -
Csa05g02561 1349 Coils Coil 462 482 - -
Csa05g02561 1349 MobiDBLite consensus disorder prediction 487 519 - -
Csa05g02561 1349 MobiDBLite consensus disorder prediction 206 239 - -
Csa05g02561 1349 MobiDBLite consensus disorder prediction 942 965 - -
Csa05g02561 1349 Gene3D Cytidine Deaminase, domain 2 1140 1326 - -
Csa05g02561 1349 Coils Coil 1121 1141 - -
Csa05g02561 1349 MobiDBLite consensus disorder prediction 206 246 - -
Csa05g02561 1349 PANTHER TRNA(ADENINE(34)) DEAMINASE, CHLOROPLASTIC 901 1339 - -
Csa05g02561 1349 MobiDBLite consensus disorder prediction 981 1005 - -
Csa05g02561 1349 MobiDBLite consensus disorder prediction 842 910 - -
Csa05g02561 1349 MobiDBLite consensus disorder prediction 1018 1033 - -
Csa05g02561 1349 MobiDBLite consensus disorder prediction 743 797 - -
Csa05g02561 1349 MobiDBLite consensus disorder prediction 530 548 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02561 K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] - csv:101215576 2572.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02181 Csa-Chr1:18946658 Csa05g02561 Csa-Chr5:26993878 1.60E-14 dispersed
Csa05g02561 Csa-Chr5:26993878 Csa06g00048 Csa-Chr6:328722 1.86E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32