Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa05g02570 | ATGGCTGCAGCATTGCCCTCACTGACCCCATTACTCATCTTTGCCAGAATCTTTGGTCTGCTTGTTGCCGTTCTGGTCTTCGTTTGGGCTTTTGTATTCAGTTCCAGCTTCGGCCATCCCCCTTCCCGTGATGATCATCTCTTCGATGTTCTGCATCCTTTGTTCATGATAATTGGTCTCGTTCTCATCAGTGGAGAAGCAATTTCGGTTCATAGTTGGTTGCCTGGTTCGAGAAATTTGAGGAAATCTGTTCATCTGAGTCTTCAAGGGCTAGCTTTGGCTTCTGGGATTTCCGGAATTTGGACCAAGTTTCATTGGGATCGTGGCTTTTTGGCTAATTTCCACAGTTTACATTCTTGGATGGGTTTGGTTGTCATCACTTTGTTTGGAGCTCAGTGGATGATGGGGTTTCTGAGCTTCTGGCATTGGAGGGAGGTGAGGGCAACAAGAGAAAGAGTGCTGCCATGGCACGTGTTTTTTGGTTTATACAGTTATGCATTGGCAGTGGTAACAGCAGAAACGGGGCTTCTTGAGAAGTTGACATTGTTGCAAACAAAGAGAAACGTACCTAGGAAGGGTCCTGAAGCCATGGTTGTGAACAGTCTAGGCTTGTCACTAGCTCTGCTTACTGGAACGGTGATGCTCATTGCTATATCTCCTAAATATCCTCCTTCCCTCCCCACCACCAAACAACAACAACAACCATTTTTCTCTAATTCAAAGCCCTTATCTTCTTAA | 738 | 45.53 | MAAALPSLTPLLIFARIFGLLVAVLVFVWAFVFSSSFGHPPSRDDHLFDVLHPLFMIIGLVLISGEAISVHSWLPGSRNLRKSVHLSLQGLALASGISGIWTKFHWDRGFLANFHSLHSWMGLVVITLFGAQWMMGFLSFWHWREVRATRERVLPWHVFFGLYSYALAVVTAETGLLEKLTLLQTKRNVPRKGPEAMVVNSLGLSLALLTGTVMLIAISPKYPPSLPTTKQQQQPFFSNSKPLSS* | 246 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 27054633 | 27056125 | + | CsaV3_5G033890.1 | Csa05g02570 | 530957 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa05g02570 | 245 | PANTHER | CYTOCHROME B561-RELATED | 2 | 225 | IPR043205 | GO:0016491 | |
| Csa05g02570 | 245 | SMART | 561_7 | 51 | 176 | IPR006593 | - | |
| Csa05g02570 | 245 | MobiDBLite | consensus disorder prediction | 226 | 245 | - | - | |
| Csa05g02570 | 245 | PANTHER | TRANSMEMBRANE ASCORBATE FERRIREDUCTASE 4-RELATED | 2 | 225 | - | - | |
| Csa05g02570 | 245 | Pfam | Eukaryotic cytochrome b561 | 51 | 181 | IPR006593 | - | |
| Csa05g02570 | 245 | ProSiteProfiles | Cytochrome b561 domain profile. | 14 | 218 | IPR006593 | - | |
| Csa05g02570 | 245 | Gene3D | - | 2 | 223 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa05g01961 | Csa-Chr5:22992737 | Csa05g02570 | Csa-Chr5:27054633 | 3.79E-31 | dispersed | |
| Csa05g02570 | Csa-Chr5:27054633 | Csa05g03088 | Csa-Chr5:30889864 | 4.22E-63 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa05g02570 | K08360 | - | csv:101205948 | 473.011 |