Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02571 ATGTGCTCTTCTTCTTCCTTTCCGTCTACCTTCTCTTTATTCCTTACCAAGTCCCCGTCCATTTCCCGACGACGGACTCTTCTTTTCCCCAACTCCCATCTATTCCTCCCCCATCTCAGGCCCACTAACTCTACATTTCGTATTGCTGCTTCTATTACTGAACCAGACCTCCACCTTTCGTCTTGGTCTAATTTCGACCAACCCAACACCGGCGACACCTATGGTGGCTGGGTATTTCTCAACACTCCAACCACTGATGCGAAAATTGAGAAACGAGGGTTGTCTCGTTTCGTAATTGGGGTGGTCGGGACCTCGCTTGTTGTTTTGTTCGCTGTTATTGCTCAAATTTCACTATCTAGAAGAGGGTTTAAGTTTCAGTGGCGTATTCCCTTGAGATCATTAGAAGGGATATTTAGTCATACGGAAAATGTAGGCGATCAAGGCAAAACTGTGGAGGATAGTTTAACCAATGACGATCTACCGACTGAATCTGGTGCTGAGTCAATAACTGATTCTAAGATTGATGACGCTATTACTTCAGATTCTGGGAATAAGCTTCAACGAGTTATAATCGCCATTCCCGTCGATTCTACTCAAGATGAAGCTTTATCGATTTTGAAGAAACTTAAGGTTATTGAAGAAGATATTAATGCTGGAGAGTTGTGTAGTCGAAGGGAATATGCTAGGTGGCTAGTTCATATGTATTCGTCATTGGAAAGGAATCCGAAACACCATATTATTCCATCTGTTTCGCTTTCTGGGTCAACAGTTGCTGCTTTTGATGATATAAGTTTTGAAGATCCTGATTTTGAGTCCATTCAAGCTCTAGCTGAAGCTGGTGTCGTACCCAGCAAGTTATCACCAAACTATGGATATGATGGCTTGGGAGATCAAGAGAGAACTTATTTTTTTCCTGAGAGGTTTGTATCTCGCCAGACTTTGATAGACTGGAAAGTTCAGTTAGATTATGAGTTTGTTCCTGGAATGCTAGAACGGATATCAAGTGCAAAGGTAGATTTTATGGACTTGAAGGAAATCAGTTCAGAAGCATCACCACAACTATTCATGGATATTTTAGCTGGGGAGAGAAGCATCCTCAGAAAAGTTTTTGGTCAAATCAAACGGTTTCAACCAAACAAACCTGCAACAAAAGCACAAGTAGCAGTCACACTGGCAAGTGGCAGGATGGCAGAAGCAATTGCTGCTGAATTATCAAGACTGGAATCCGAGAGTTCTGCTAGAAAGGCTGAGATAGAAGATATCAAGTTGGAATTGGTAGAAAGAGGAGACATACAAAGGTATTGGGATAAGAAGCTAACTGAGGAGAAAAAACGCCTTTTAGATGTGGAGGAACTTTATCTTGCTGCTATCAGTAATTTGGGAGAGGAGAAAATGGTTCAAGAGAAGATTTTTTCCGAGTATTTAAAGGAGAAGGCATCTATAGACTGTCAGAGGCAATTGCTTCTCAGCCTCAACGAAGAAGTTGATGGGATAGCAGAAAAGATTCTTTCTGAGAGATCTGTATGTGAGACAGAGCAGAATGAGCTACACAATATGCACACCGATTTACAGAACCAGCTAGAGGGGATGCTTGATACAAAATCTGTTCTTGAAGCTGAGAAGGAAGCTCTCCGTATTCTTAGAACTTGGGTAGAAGACGAAGCAAGGAAAAGCCAAGCTCGTGCTAAGGTTCTTGAGGAGGTCGGACGAAGGTGGAAATGGGATGATCAAGCTTGA 1737 42.2 MCSSSSFPSTFSLFLTKSPSISRRRTLLFPNSHLFLPHLRPTNSTFRIAASITEPDLHLSSWSNFDQPNTGDTYGGWVFLNTPTTDAKIEKRGLSRFVIGVVGTSLVVLFAVIAQISLSRRGFKFQWRIPLRSLEGIFSHTENVGDQGKTVEDSLTNDDLPTESGAESITDSKIDDAITSDSGNKLQRVIIAIPVDSTQDEALSILKKLKVIEEDINAGELCSRREYARWLVHMYSSLERNPKHHIIPSVSLSGSTVAAFDDISFEDPDFESIQALAEAGVVPSKLSPNYGYDGLGDQERTYFFPERFVSRQTLIDWKVQLDYEFVPGMLERISSAKVDFMDLKEISSEASPQLFMDILAGERSILRKVFGQIKRFQPNKPATKAQVAVTLASGRMAEAIAAELSRLESESSARKAEIEDIKLELVERGDIQRYWDKKLTEEKKRLLDVEELYLAAISNLGEEKMVQEKIFSEYLKEKASIDCQRQLLLSLNEEVDGIAEKILSERSVCETEQNELHNMHTDLQNQLEGMLDTKSVLEAEKEALRILRTWVEDEARKSQARAKVLEEVGRRWKWDDQA* 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27057063 27061750 + CsaV3_5G033900.1 Csa05g02571 530958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02571 578 MobiDBLite consensus disorder prediction 148 176 - -
Csa05g02571 578 PANTHER SLH DOMAIN PROTEIN 11 577 - -
Csa05g02571 578 Coils Coil 404 424 - -
Csa05g02571 578 Coils Coil 520 540 - -
Csa05g02571 578 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 11 577 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02571 - - - csv:101214855 1112.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01723 Csa-Chr3:12911598 Csa05g02571 Csa-Chr5:27057063 8.34E-71 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g250 . . . . . . . . Cmo04g01614 . . . Car04g01591 . . . Cpe01g01370 Bhi07g01379 . . Lac13g0450 . . . Cla05g02336 Cam05g2510 Cec05g2534 Cco05g2577 Clacu05g2504 Cmu05g2366 Cre05g2483 Cone13ag0862 Cone19ag0862 . . Lsi04g00297 Csa05g02571 . Cme10g00299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014585 0 1 1 0 1 0 2 1 1 0 0 0 1 1 1 1 0 2 1 1 1 1 0 1 0 0 1 0 0 1 20