Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02577 ATGTGTGGAGAGGATCAAGAAGAGGATCATCAACAACAACAACATCAAGGAGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAACTTCTTCTCCACCAACAACAACTACAAAACAACGACGGTGACCACAACAACAACGATCATCATATGATGTATGGAGTAGAGCATCATCATCATGGAATTGGAAGATCAGGGTTAATTTTTCCACCCGAAGTCATGCCTCCGATGCTGCAACCGTGGTCGTCGCTTAATCCGTTTATGATCCCTCCCCCACCACCGCCGCCTCTACCAACATCATTATCATGTTCATCGTCGTCTTATGGTAGTTTGTTTAACCGAAGGCCACCTAATTGTCTTCAATTTGCTTATGATGGTCCATCTTCGGCTGACCATCTGGGTCGAATCATATCGACGACGCTAGGACCGGTGGTTCATCCAGGTTCCACGGCTCCCTTTGGGCTACAAGCTGAGCTTGGGAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCTAAGCTAAGGAGCATACTCCCTAGTACCACTAAAACAGACAAAGCATCATTGTTAGCGGAAGTAATAGAACACGTGAAAGAGCTAAAACGACAAACATCAATAATAGCGGAAACAAGTCCAATACCAACAGAAGTTGATGAAGTAAGTGTAGATGATGCTTCAGAACAAGAGATGATGATGATAAGTAATAATGGATCAATATCATCATCAGCCAAGTTTGTAATAAAGGCTTCTCTTTGCTGTGAAGACCGTTCAGATCTTCTTCCTGATCTCATCAAAACCCTCAAATCTTTACGTTTAACAACACTCAAAGCTGAAATTACAACACTTGGTGGTCGTTTAAGAAACGTTTTGTTCGTAACGGCTGACGAAGAACAACAACAACAACACAATATTACATCTATTATTCAAGATGCCCTTAAAGCTGTCATTGAAAAAACTGCAGGGGATCATGATTCTTCTTCAGCAAATATCAAAAGACAAAGGACCACCACTACAAATAACATTAATAATAATAATATCCTTTAA 1116 40.5 MCGEDQEEDHQQQQHQGECSQTIENMFQEQLLLHQQQLQNNDGDHNNNDHHMMYGVEHHHHGIGRSGLIFPPEVMPPMLQPWSSLNPFMIPPPPPPPLPTSLSCSSSSYGSLFNRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSILPSTTKTDKASLLAEVIEHVKELKRQTSIIAETSPIPTEVDEVSVDDASEQEMMMISNNGSISSSAKFVIKASLCCEDRSDLLPDLIKTLKSLRLTTLKAEITTLGGRLRNVLFVTADEEQQQQHNITSIIQDALKAVIEKTAGDHDSSSANIKRQRTTTTNNINNNNIL* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27092009 27094880 + CsaV3_5G033960.1 Csa05g02577 530964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02577 371 SMART finulus 181 230 IPR011598 GO:0046983
Csa05g02577 371 Pfam Helix-loop-helix DNA-binding domain 178 224 IPR011598 GO:0046983
Csa05g02577 371 Gene3D - 170 231 IPR036638 GO:0046983
Csa05g02577 371 CDD bHLH_AtAIG1_like 170 247 - -
Csa05g02577 371 MobiDBLite consensus disorder prediction 354 371 - -
Csa05g02577 371 MobiDBLite consensus disorder prediction 347 371 - -
Csa05g02577 371 PANTHER TRANSCRIPTION FACTOR BHLH30 76 365 - -
Csa05g02577 371 PANTHER TRANSCRIPTION FACTOR BHLH30 76 365 IPR045847 GO:0003700|GO:0006355
Csa05g02577 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 231 IPR036638 GO:0046983
Csa05g02577 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03991 Csa-Chr3:34884792 Csa05g02577 Csa-Chr5:27092009 2.55E-45 dispersed
Csa05g02577 Csa-Chr5:27092009 Csa06g00190 Csa-Chr6:1303975 8.60E-34 dispersed
Csa05g02577 Csa-Chr5:27092009 Csa02g02212 Csa-Chr2:19895721 1.34E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31839 PF00010 HLH 7.90E-13 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02577 - - csv:101214615 581.637