Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02582 ATGGACGGAATTTGCATCGACGAAACAACTTCCACCGAATCTAAATCTCCACCGCCGGACACCAGTCTCTGCCGCGTCGGAAGTGGCGTCACCAGTGTCGTTCTGGATTCCGACTCCAGCGGCGGTGGAGTTGAAGCGGAGTCACGCAAATTACCATCTTCCCGTTACAAAGGAGTGGTACCACAGCCCAACGGCCGATGGGGGGCTCAGATTTACGAGAAGCATCAAAGAGTATGGCTGGGTACTTTCAACGAAGAGGATGAAGCAGCACGTGCTTACGACGTCGCTGCTCAACGTTTCCGTGGCCGTGACGCTGTTACTAATTTCAAGCCGTTAACACACGGCGGTGGTGAAGAAGACGACATCGTTTCCGCTTTCCTCAACTCCCATTCCAAGGCGGAGATCGTCGACATGTTACGTAAGCATACTTATTTAGATGAACTCCACCAAAGCAAACGAAACGCTGGGTTATCCGGTTCCGATCGTAAACAAAACCGTTTCCTATCCGGTTCCGATGATGATCCGGAAACCGCTCGGGAACTTTTATTTGAAAAAGCCGTAACTCCAAGCGATGTGGGGAAGTTAAACCGTTTGGTCATTCCAAAACAACACGCGGAAAAGAATTTCCCTTTACAAACCGGTTCGACCGCTTCCTCCAAAGGTCTATTGTTGAACTTTGAAGATGGAGGAGGGAAAGTATGGCGGTTCAGGTACTCATATTGGAATAGTAGCCAAAGCTATGTGTTGACGAAAGGATGGAGCCGGTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATTGTTAGCTTCTTGAAATCAACCGGACAAGACAAACAGCTTTACATTGAATGGAAGGCACGAAAACCTTCTACCACAACCGGGTCCGCTATCAACCCGGTTCAGACGTTCAGACTGTTTGGAGTTGACATTATCAAAGTTTCGCCCAATAGTGGGTGTAGTGAGAAGAGAAGGAGAGAATTGGAATTTCTCACTTTACAATGTACCAAAAAACAAAGGGTTGTGGGAGCATTGTAA 1035 47.83 MDGICIDETTSTESKSPPPDTSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLTHGGGEEDDIVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLSGSDRKQNRFLSGSDDDPETARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKPSTTTGSAINPVQTFRLFGVDIIKVSPNSGCSEKRRRELEFLTLQCTKKQRVVGAL* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27134879 27137672 + CsaV3_5G034010.1 Csa05g02582 530969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02582 344 SMART rav1_2 55 116 IPR001471 GO:0003700|GO:0006355
Csa05g02582 344 Pfam B3 DNA binding domain 183 284 IPR003340 GO:0003677
Csa05g02582 344 SUPERFAMILY DNA-binding domain 54 110 IPR016177 GO:0003677
Csa05g02582 344 Pfam AP2 domain 54 102 IPR001471 GO:0003700|GO:0006355
Csa05g02582 344 Gene3D - 170 296 IPR015300 -
Csa05g02582 344 CDD B3_DNA 182 270 IPR003340 GO:0003677
Csa05g02582 344 Gene3D AP2/ERF domain 54 111 IPR036955 GO:0003700|GO:0006355
Csa05g02582 344 ProSiteProfiles AP2/ERF domain profile. 55 110 IPR001471 GO:0003700|GO:0006355
Csa05g02582 344 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 14 344 - -
Csa05g02582 344 MobiDBLite consensus disorder prediction 154 175 - -
Csa05g02582 344 MobiDBLite consensus disorder prediction 7 26 - -
Csa05g02582 344 MobiDBLite consensus disorder prediction 1 26 - -
Csa05g02582 344 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 344 IPR044800 GO:0003700
Csa05g02582 344 SMART B3_2 183 288 IPR003340 GO:0003677
Csa05g02582 344 CDD AP2 54 109 IPR001471 GO:0003700|GO:0006355
Csa05g02582 344 ProSiteProfiles B3 DNA-binding domain profile. 183 288 IPR003340 GO:0003677
Csa05g02582 344 SUPERFAMILY DNA-binding pseudobarrel domain 181 277 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03118 Csa-Chr1:27284528 Csa05g02582 Csa-Chr5:27134879 2.53E-56 dispersed
Csa04g00592 Csa-Chr4:3908314 Csa05g02582 Csa-Chr5:27134879 9.32E-46 dispersed
Csa05g01482 Csa-Chr5:17061938 Csa05g02582 Csa-Chr5:27134879 4.90E-136 dispersed
Csa05g02582 Csa-Chr5:27134879 Csa06g00841 Csa-Chr6:6759884 6.83E-48 dispersed
Csa05g02582 Csa-Chr5:27134879 Csa05g00141 Csa-Chr5:765460 3.88E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31841 PF02362 B3 1.20E-27 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02582 K09287 - csv:101203784 677.552