Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g02582 | ATGGACGGAATTTGCATCGACGAAACAACTTCCACCGAATCTAAATCTCCACCGCCGGACACCAGTCTCTGCCGCGTCGGAAGTGGCGTCACCAGTGTCGTTCTGGATTCCGACTCCAGCGGCGGTGGAGTTGAAGCGGAGTCACGCAAATTACCATCTTCCCGTTACAAAGGAGTGGTACCACAGCCCAACGGCCGATGGGGGGCTCAGATTTACGAGAAGCATCAAAGAGTATGGCTGGGTACTTTCAACGAAGAGGATGAAGCAGCACGTGCTTACGACGTCGCTGCTCAACGTTTCCGTGGCCGTGACGCTGTTACTAATTTCAAGCCGTTAACACACGGCGGTGGTGAAGAAGACGACATCGTTTCCGCTTTCCTCAACTCCCATTCCAAGGCGGAGATCGTCGACATGTTACGTAAGCATACTTATTTAGATGAACTCCACCAAAGCAAACGAAACGCTGGGTTATCCGGTTCCGATCGTAAACAAAACCGTTTCCTATCCGGTTCCGATGATGATCCGGAAACCGCTCGGGAACTTTTATTTGAAAAAGCCGTAACTCCAAGCGATGTGGGGAAGTTAAACCGTTTGGTCATTCCAAAACAACACGCGGAAAAGAATTTCCCTTTACAAACCGGTTCGACCGCTTCCTCCAAAGGTCTATTGTTGAACTTTGAAGATGGAGGAGGGAAAGTATGGCGGTTCAGGTACTCATATTGGAATAGTAGCCAAAGCTATGTGTTGACGAAAGGATGGAGCCGGTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATTGTTAGCTTCTTGAAATCAACCGGACAAGACAAACAGCTTTACATTGAATGGAAGGCACGAAAACCTTCTACCACAACCGGGTCCGCTATCAACCCGGTTCAGACGTTCAGACTGTTTGGAGTTGACATTATCAAAGTTTCGCCCAATAGTGGGTGTAGTGAGAAGAGAAGGAGAGAATTGGAATTTCTCACTTTACAATGTACCAAAAAACAAAGGGTTGTGGGAGCATTGTAA | 1035 | 47.83 | MDGICIDETTSTESKSPPPDTSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLTHGGGEEDDIVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLSGSDRKQNRFLSGSDDDPETARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKPSTTTGSAINPVQTFRLFGVDIIKVSPNSGCSEKRRRELEFLTLQCTKKQRVVGAL* | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 27134879 | 27137672 | + | CsaV3_5G034010.1 | Csa05g02582 | 530969 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g02582 | 344 | SMART | rav1_2 | 55 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Csa05g02582 | 344 | Pfam | B3 DNA binding domain | 183 | 284 | IPR003340 | GO:0003677 | |
Csa05g02582 | 344 | SUPERFAMILY | DNA-binding domain | 54 | 110 | IPR016177 | GO:0003677 | |
Csa05g02582 | 344 | Pfam | AP2 domain | 54 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Csa05g02582 | 344 | Gene3D | - | 170 | 296 | IPR015300 | - | |
Csa05g02582 | 344 | CDD | B3_DNA | 182 | 270 | IPR003340 | GO:0003677 | |
Csa05g02582 | 344 | Gene3D | AP2/ERF domain | 54 | 111 | IPR036955 | GO:0003700|GO:0006355 | |
Csa05g02582 | 344 | ProSiteProfiles | AP2/ERF domain profile. | 55 | 110 | IPR001471 | GO:0003700|GO:0006355 | |
Csa05g02582 | 344 | PANTHER | PROTEIN RAV1, PUTATIVE-RELATED | 14 | 344 | - | - | |
Csa05g02582 | 344 | MobiDBLite | consensus disorder prediction | 154 | 175 | - | - | |
Csa05g02582 | 344 | MobiDBLite | consensus disorder prediction | 7 | 26 | - | - | |
Csa05g02582 | 344 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Csa05g02582 | 344 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 14 | 344 | IPR044800 | GO:0003700 | |
Csa05g02582 | 344 | SMART | B3_2 | 183 | 288 | IPR003340 | GO:0003677 | |
Csa05g02582 | 344 | CDD | AP2 | 54 | 109 | IPR001471 | GO:0003700|GO:0006355 | |
Csa05g02582 | 344 | ProSiteProfiles | B3 DNA-binding domain profile. | 183 | 288 | IPR003340 | GO:0003677 | |
Csa05g02582 | 344 | SUPERFAMILY | DNA-binding pseudobarrel domain | 181 | 277 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g03118 | Csa-Chr1:27284528 | Csa05g02582 | Csa-Chr5:27134879 | 2.53E-56 | dispersed | |
Csa04g00592 | Csa-Chr4:3908314 | Csa05g02582 | Csa-Chr5:27134879 | 9.32E-46 | dispersed | |
Csa05g01482 | Csa-Chr5:17061938 | Csa05g02582 | Csa-Chr5:27134879 | 4.90E-136 | dispersed | |
Csa05g02582 | Csa-Chr5:27134879 | Csa06g00841 | Csa-Chr6:6759884 | 6.83E-48 | dispersed | |
Csa05g02582 | Csa-Chr5:27134879 | Csa05g00141 | Csa-Chr5:765460 | 3.88E-47 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31841 | PF02362 | B3 | 1.20E-27 | CL0405 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g02582 | K09287 | - | csv:101203784 | 677.552 |