Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02583 ATGGATTTTGTCCACACTTTTCTGGATATTCGTGTTGGAATGGATTTGAGTAACTATGCTGATGCTTTGGATCGAGAACGCCAAAAAATTCAAGTCTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTCGTCACTAGAGCTATTGATTCTTGCCGGCAGCAGTTGTCTGGGGTGTCGACGGAGAGCTCTGAGCATACATCAAGCGATCGCCCTGTTTTGGAGGAGTTTATTCCTATTAACAAACCTTGTGTGAATTCTCATTTTGAAATTGAAGAAGACGAACAATCAAAACCGGGGAAGATTGAATTGGGTCGATCGGATTGGCTCAAATCGGCTCAGCTTTGGAATCAATCGCCAGATCCTCCTCTTACAGAGGATGTTGCTAAGGAGGTTGTTGAGGTAAAAAATAATGGCGGTGGCGGTGCTTTTCAACCATTTGAAAAAACAACTCCATTGAAAACAGAGTCGGCGGTGGTAGTCGGTAGGACGGCGGGTTCTTCATTTCCGGAGGCGACAACAATTTCAATTCCGGAAACGACAACAAGTTCGACGGCGGGAACCGCTTCTAAATGTGGCGGAGGAACTGCTAAACGAGAAGATAAGGAATCTCAGACCCAAAGAAAACAGAGGCGGTGCTGGTCGTCAGAATTACACCGGCGATTCGTTCACGCCCTTCAACAACTTGGCGGTCCTCATGTTGCCACACCAAAACAAATCAGGGAGTTAATGAAGGTGGATGGACTCACTAACGATGAAGTCAAAAGTCATTTACAGAAGTACCGATTGCACTCAAGAAGGCCAACAAATACAGCAATGCAAGACAGCGGGAGCTCATCGGCGCACCAGCAATTCGTGGTGGTGGGAAGCATATGGGTTCCACCACCACCTCCACCGAAATACACGGTGGCAACAACAGAGAAAGGGAGAAATGGGATTTATGCTCCGGTGGCGACGTTGGTAGGAGGGAAGGCGAGCCAGAGCAGCGGGGGAATGGTTCATTCAAATTCGCCGGCCACATCTTCTTGCACTCACACCACCACAAATTCGCCGAATTCGCGATCGGCGACATAG 1071 48.46 MDFVHTFLDIRVGMDLSNYADALDRERQKIQVFQRELPLCLELVTRAIDSCRQQLSGVSTESSEHTSSDRPVLEEFIPINKPCVNSHFEIEEDEQSKPGKIELGRSDWLKSAQLWNQSPDPPLTEDVAKEVVEVKNNGGGGAFQPFEKTTPLKTESAVVVGRTAGSSFPEATTISIPETTTSSTAGTASKCGGGTAKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHSRRPTNTAMQDSGSSSAHQQFVVVGSIWVPPPPPPKYTVATTEKGRNGIYAPVATLVGGKASQSSGGMVHSNSPATSSCTHTTTNSPNSRSAT* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27140404 27142435 + CsaV3_5G034020.1 Csa05g02583 530970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02583 356 MobiDBLite consensus disorder prediction 194 212 - -
Csa05g02583 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 347 IPR044787 GO:0003700|GO:0006355
Csa05g02583 356 MobiDBLite consensus disorder prediction 322 356 - -
Csa05g02583 356 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Csa05g02583 356 SUPERFAMILY Homeodomain-like 205 265 IPR009057 -
Csa05g02583 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Csa05g02583 356 Coils Coil 16 36 - -
Csa05g02583 356 PANTHER TRANSCRIPTION FACTOR HHO2 16 347 - -
Csa05g02583 356 Gene3D - 207 265 - -
Csa05g02583 356 MobiDBLite consensus disorder prediction 178 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02583 - - - csv:101203539 686.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01203 Csa-Chr2:11824530 Csa05g02583 Csa-Chr5:27140404 2.15E-45 dispersed
Csa05g02583 Csa-Chr5:27140404 Csa07g00784 Csa-Chr7:5506453 6.04E-43 dispersed
Csa05g02583 Csa-Chr5:27140404 Csa06g00332 Csa-Chr6:2554114 6.69E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g01095 . 12 262 G2-like Transcription Factor Family AT3G24120 60.5 1.6e-71 266.5
Csa06g03417 . 31 195 G2-like Transcription Factor Family AT3G24120 59.2 2.1e-44 176.4
Csa06g01145 CCT 22 195 G2-like Transcription Factor Family AT3G24120 57.4 3.1e-43 172.6
Csa07g01218 CCT 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Csa03g02731 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 7.8e-39 157.9
Csa03g01797 . 241 399 G2-like Transcription Factor Family AT5G16560 61.5 3.9e-41 166.0
Csa03g04154 CCT 1 161 G2-like Transcription Factor Family AT5G42630 59.0 1.9e-37 152.9
Csa06g00332 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 3.7e-51 198.7
Csa05g02583 . 19 258 G2-like Transcription Factor Family AT1G25550 52.0 3.5e-49 192.2
Csa04g01908 . 1 302 G2-like Transcription Factor Family AT5G05090 56.2 6.6e-74 274.2
Csa03g03685 . 1 287 G2-like Transcription Factor Family AT5G05090 54.7 1.5e-70 263.1
Csa03g01095 . 12 298 G2-like Transcription Factor Family AT4G13640 51.7 6.5e-54 208.0
Csa03g01095 . 12 262 G2-like Transcription Factor Family AT3G24120 60.5 1.6e-71 266.5
Csa06g03417 . 31 195 G2-like Transcription Factor Family AT3G24120 59.2 2.1e-44 176.4
Csa06g01145 CCT 22 195 G2-like Transcription Factor Family AT3G24120 57.4 3.1e-43 172.6
Csa07g01218 CCT 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Csa03g02731 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 7.8e-39 157.9
Csa02g00846 . 3 252 G2-like Transcription Factor Family AT1G69580 50.9 2.0e-51 199.9
Csa07g01218 CCT 1 382 G2-like Transcription Factor Family AT1G79430 54.2 3.2e-87 318.9
Csa06g01145 CCT 1 364 G2-like Transcription Factor Family AT1G79430 51.5 1.5e-76 283.5
Csa03g01095 . 39 198 G2-like Transcription Factor Family AT1G79430 63.0 3.2e-39 159.5
Csa06g03415 . 54 262 G2-like Transcription Factor Family AT2G01060 64.3 8.3e-52 200.7
Csa04g01908 . 1 302 G2-like Transcription Factor Family AT3G10760 62.2 2.9e-90 328.9
Csa03g03685 . 1 287 G2-like Transcription Factor Family AT3G10760 59.1 8.9e-84 307.4
Csa04g01908 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 1.3e-60 229.9
Csa03g03685 . 1 199 G2-like Transcription Factor Family AT2G40970 60.0 1.3e-58 223.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013799 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31842 None None None None Csa TF