Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g02583 | ATGGATTTTGTCCACACTTTTCTGGATATTCGTGTTGGAATGGATTTGAGTAACTATGCTGATGCTTTGGATCGAGAACGCCAAAAAATTCAAGTCTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTCGTCACTAGAGCTATTGATTCTTGCCGGCAGCAGTTGTCTGGGGTGTCGACGGAGAGCTCTGAGCATACATCAAGCGATCGCCCTGTTTTGGAGGAGTTTATTCCTATTAACAAACCTTGTGTGAATTCTCATTTTGAAATTGAAGAAGACGAACAATCAAAACCGGGGAAGATTGAATTGGGTCGATCGGATTGGCTCAAATCGGCTCAGCTTTGGAATCAATCGCCAGATCCTCCTCTTACAGAGGATGTTGCTAAGGAGGTTGTTGAGGTAAAAAATAATGGCGGTGGCGGTGCTTTTCAACCATTTGAAAAAACAACTCCATTGAAAACAGAGTCGGCGGTGGTAGTCGGTAGGACGGCGGGTTCTTCATTTCCGGAGGCGACAACAATTTCAATTCCGGAAACGACAACAAGTTCGACGGCGGGAACCGCTTCTAAATGTGGCGGAGGAACTGCTAAACGAGAAGATAAGGAATCTCAGACCCAAAGAAAACAGAGGCGGTGCTGGTCGTCAGAATTACACCGGCGATTCGTTCACGCCCTTCAACAACTTGGCGGTCCTCATGTTGCCACACCAAAACAAATCAGGGAGTTAATGAAGGTGGATGGACTCACTAACGATGAAGTCAAAAGTCATTTACAGAAGTACCGATTGCACTCAAGAAGGCCAACAAATACAGCAATGCAAGACAGCGGGAGCTCATCGGCGCACCAGCAATTCGTGGTGGTGGGAAGCATATGGGTTCCACCACCACCTCCACCGAAATACACGGTGGCAACAACAGAGAAAGGGAGAAATGGGATTTATGCTCCGGTGGCGACGTTGGTAGGAGGGAAGGCGAGCCAGAGCAGCGGGGGAATGGTTCATTCAAATTCGCCGGCCACATCTTCTTGCACTCACACCACCACAAATTCGCCGAATTCGCGATCGGCGACATAG | 1071 | 48.46 | MDFVHTFLDIRVGMDLSNYADALDRERQKIQVFQRELPLCLELVTRAIDSCRQQLSGVSTESSEHTSSDRPVLEEFIPINKPCVNSHFEIEEDEQSKPGKIELGRSDWLKSAQLWNQSPDPPLTEDVAKEVVEVKNNGGGGAFQPFEKTTPLKTESAVVVGRTAGSSFPEATTISIPETTTSSTAGTASKCGGGTAKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHSRRPTNTAMQDSGSSSAHQQFVVVGSIWVPPPPPPKYTVATTEKGRNGIYAPVATLVGGKASQSSGGMVHSNSPATSSCTHTTTNSPNSRSAT* | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 27140404 | 27142435 | + | CsaV3_5G034020.1 | Csa05g02583 | 530970 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g02583 | 356 | MobiDBLite | consensus disorder prediction | 194 | 212 | - | - | |
Csa05g02583 | 356 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 16 | 347 | IPR044787 | GO:0003700|GO:0006355 | |
Csa05g02583 | 356 | MobiDBLite | consensus disorder prediction | 322 | 356 | - | - | |
Csa05g02583 | 356 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 208 | 263 | IPR006447 | GO:0003677 | |
Csa05g02583 | 356 | SUPERFAMILY | Homeodomain-like | 205 | 265 | IPR009057 | - | |
Csa05g02583 | 356 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 205 | 265 | IPR017930 | - | |
Csa05g02583 | 356 | Coils | Coil | 16 | 36 | - | - | |
Csa05g02583 | 356 | PANTHER | TRANSCRIPTION FACTOR HHO2 | 16 | 347 | - | - | |
Csa05g02583 | 356 | Gene3D | - | 207 | 265 | - | - | |
Csa05g02583 | 356 | MobiDBLite | consensus disorder prediction | 178 | 212 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01203 | Csa-Chr2:11824530 | Csa05g02583 | Csa-Chr5:27140404 | 2.15E-45 | dispersed | |
Csa05g02583 | Csa-Chr5:27140404 | Csa07g00784 | Csa-Chr7:5506453 | 6.04E-43 | dispersed | |
Csa05g02583 | Csa-Chr5:27140404 | Csa06g00332 | Csa-Chr6:2554114 | 6.69E-99 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31842 | None | None | None | None | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g02583 | - | - | csv:101203539 | 686.026 |