Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02583 ATGGATTTTGTCCACACTTTTCTGGATATTCGTGTTGGAATGGATTTGAGTAACTATGCTGATGCTTTGGATCGAGAACGCCAAAAAATTCAAGTCTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTCGTCACTAGAGCTATTGATTCTTGCCGGCAGCAGTTGTCTGGGGTGTCGACGGAGAGCTCTGAGCATACATCAAGCGATCGCCCTGTTTTGGAGGAGTTTATTCCTATTAACAAACCTTGTGTGAATTCTCATTTTGAAATTGAAGAAGACGAACAATCAAAACCGGGGAAGATTGAATTGGGTCGATCGGATTGGCTCAAATCGGCTCAGCTTTGGAATCAATCGCCAGATCCTCCTCTTACAGAGGATGTTGCTAAGGAGGTTGTTGAGGTAAAAAATAATGGCGGTGGCGGTGCTTTTCAACCATTTGAAAAAACAACTCCATTGAAAACAGAGTCGGCGGTGGTAGTCGGTAGGACGGCGGGTTCTTCATTTCCGGAGGCGACAACAATTTCAATTCCGGAAACGACAACAAGTTCGACGGCGGGAACCGCTTCTAAATGTGGCGGAGGAACTGCTAAACGAGAAGATAAGGAATCTCAGACCCAAAGAAAACAGAGGCGGTGCTGGTCGTCAGAATTACACCGGCGATTCGTTCACGCCCTTCAACAACTTGGCGGTCCTCATGTTGCCACACCAAAACAAATCAGGGAGTTAATGAAGGTGGATGGACTCACTAACGATGAAGTCAAAAGTCATTTACAGAAGTACCGATTGCACTCAAGAAGGCCAACAAATACAGCAATGCAAGACAGCGGGAGCTCATCGGCGCACCAGCAATTCGTGGTGGTGGGAAGCATATGGGTTCCACCACCACCTCCACCGAAATACACGGTGGCAACAACAGAGAAAGGGAGAAATGGGATTTATGCTCCGGTGGCGACGTTGGTAGGAGGGAAGGCGAGCCAGAGCAGCGGGGGAATGGTTCATTCAAATTCGCCGGCCACATCTTCTTGCACTCACACCACCACAAATTCGCCGAATTCGCGATCGGCGACATAG 1071 48.46 MDFVHTFLDIRVGMDLSNYADALDRERQKIQVFQRELPLCLELVTRAIDSCRQQLSGVSTESSEHTSSDRPVLEEFIPINKPCVNSHFEIEEDEQSKPGKIELGRSDWLKSAQLWNQSPDPPLTEDVAKEVVEVKNNGGGGAFQPFEKTTPLKTESAVVVGRTAGSSFPEATTISIPETTTSSTAGTASKCGGGTAKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHSRRPTNTAMQDSGSSSAHQQFVVVGSIWVPPPPPPKYTVATTEKGRNGIYAPVATLVGGKASQSSGGMVHSNSPATSSCTHTTTNSPNSRSAT* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27140404 27142435 + CsaV3_5G034020.1 Csa05g02583 530970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02583 356 MobiDBLite consensus disorder prediction 194 212 - -
Csa05g02583 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 347 IPR044787 GO:0003700|GO:0006355
Csa05g02583 356 MobiDBLite consensus disorder prediction 322 356 - -
Csa05g02583 356 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Csa05g02583 356 SUPERFAMILY Homeodomain-like 205 265 IPR009057 -
Csa05g02583 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Csa05g02583 356 Coils Coil 16 36 - -
Csa05g02583 356 PANTHER TRANSCRIPTION FACTOR HHO2 16 347 - -
Csa05g02583 356 Gene3D - 207 265 - -
Csa05g02583 356 MobiDBLite consensus disorder prediction 178 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01203 Csa-Chr2:11824530 Csa05g02583 Csa-Chr5:27140404 2.15E-45 dispersed
Csa05g02583 Csa-Chr5:27140404 Csa07g00784 Csa-Chr7:5506453 6.04E-43 dispersed
Csa05g02583 Csa-Chr5:27140404 Csa06g00332 Csa-Chr6:2554114 6.69E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31842 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02583 - - csv:101203539 686.026