Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02598 ATGGCTCCCAAATCCGATAGCGCAGAAGCGATCGTGCTCAACTTCGTAAACGAGCAAAATCGTCCAATAAACTCCCAAAATGCAGCCGATTCATTACAAAAGTTCAATCTCAAGAAAACGGCGGTGCAAAAGGCACTGGATTCCCTCGCCGACAGTGGACGGATTTCATTCAAGGAGTATGGCAAGCAGAAGATATATATCGCTCGGCAAGACCAATTTCAGATCCCCAACAGCGAGGAACTCACTCAGATGAAGGAAGCAAACGCCAAACTGCAGAAACAGCTAGGCGAGCACAAAAAGGCTATTAGCCAGGTTGAGGAAGAAATTCGAACATTGCAGTCAAACTTAACGCTGGAACAAATGCGGGAAAAGGAAGCTATGCTCAGAATGGAGGTCAAGGAATTGGAAGAGAAATTAGAAGTATTGCGCAGAGGTGTAACGTTGGTGAGCCCAGAAGACCGCAAAGCAATTGAGCAGATATACTCTGAGAAATTAAGCCAGTGGCGAAAGCGAAAAAGGATGTTCAAAGATATATGGGATGCTATCACTGAGAACTCATCCAAGGATTTAAAAGAATTTAAGGAAGAACTTGGCATTGAGTACGATGAAGATGTGGGCGTGAACTTGCAGTCATTTAGCGATATGTTACCACAAAATAGAAAGAGGCCCAGGGGTAAGTGA 681 44.49 MAPKSDSAEAIVLNFVNEQNRPINSQNAADSLQKFNLKKTAVQKALDSLADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQKQLGEHKKAISQVEEEIRTLQSNLTLEQMREKEAMLRMEVKELEEKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSSKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27221296 27224319 + CsaV3_5G034170.1 Csa05g02598 530985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02598 226 PANTHER TBP-1 INTERACTING PROTEIN 1 221 IPR040461 GO:0007131
Csa05g02598 226 Pfam TBPIP/Hop2 winged helix domain 8 68 IPR010776 -
Csa05g02598 226 Pfam Leucine zipper with capping helix domain 149 206 IPR040661 -
Csa05g02598 226 Coils Coil 81 145 - -
Csa05g02598 226 Gene3D - 1 78 IPR036388 -
Csa05g02598 226 SUPERFAMILY Winged helix DNA-binding domain 6 74 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02598 K06695 PSMC3IP; 26S proteasome regulatory subunit, ATPase 3, interacting protein - csv:101222139 419.083
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g288 . . . . . . Bma14g01703 . . Cmo18g01045 . Cma18g01032 . Car18g00955 Sed06g1873 . . Bhi07g01342 Tan04g0881 Cmetu10g0499 Lac13g0478 Hepe01g1206 . . Cla05g02313 Cam05g2485 Cec05g2508 Cco05g2550 Clacu05g2481 Cmu05g2342 Cre05g2459 . . Cone6ag0457 Cone9ag0469 Lsi04g00268 Csa05g02598 Chy10g01133 Cme10g00274 . Blo11g00835 . . Bpe11g01694 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010079 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33