Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02600 ATGGCTAACGATACTGCTCACCGGAAGCACCATCGATCTGCTTCCGATGAAGACGATGATAAATCTTCCAAGCGTCACAAACACCGTCACCATCGCCGCCACCACCGACATCGTCACAGCAGCAATAAGAACGAAGAAGAAAGCTGCCGTGACCGGGAGGACAGTGTTCCTCCCGCTGCTAATCGCAGATCTCGGCCTGAAGATGACGTTGAGGAAGGTGAAATTCTGGAAGAGGACGAGTCTGGTGTTCGCGAGAACGAGGGCGCGACGAAGGAGGTGGATGTGGAATTTGGGAAACCTGAAGCTGATGAAATTTCTGATCGAATTGACCAGCCCTCTATGGAGTGTCATTCGGTGGATGAATCATCTAATAACCAGGCTAATTTTATTGTGAAGGAGGGGGCAGGCAACGGTGCTCAAGATCAGAAGACCTCCAAAATGGACTCTAAGTTCTATAATTTAGACATGGACAAAGGTGGCTACTATCTAAAAAAAGGCACAAACAAGGAAAACATGATTCTTTATCAAACCGACTCTGGTTGTAAGCATGGCAATGATGCTAGCTTTTCCATGAGTGAAGTGGCTGGAACTAAATACAACAATATTGAACATTGCCGAGAGGGTCATAGCAAAGTGGATTGTGATCAAGAATCTCTGGAGTTAGATGAGAAGCTGCACAAACAAATGGCATCTCCTTCTAAAGGGGCTAGTAAGAAAATAAGCAACAACGGCAATGGAAAGGTGGCAACAGATGGAAACACCTTGGGGAATGGGAAAAGGCCACAGTTAGAAAGAACTGAAGGCAAGTCTGAGGATTTTACGCCATCAACATCTCATGATCGATTCATCGATGCATCAGATTGTAGGAGTAGATCAAGGTCAAATTGTCATTCTAGGGGACAATCTCAGTCTCGTGAAACAGTAGAAGAGGAGGCAGAGTCAAAGAGTAGACATTATCATGGTTGGGATCAACCAATGTTTGATGATAAAATTAAAATTCACAATGACTTGGATGATGATTACACTGAATGTGTTAGGGGAGAGGGAAGGCATCGGAGCAGGGACACGAAGGACAACGGGAGAAGTAAGATGGAGTTGGATAGGGAATGGTCCAAGGAAAATGAAATGGGAAAAAACAAAGATAAAGATAGGGGGGTAGATAAGCAAAAGTATGATGAGAGAGAGAGAGGTAGGAGTAAAGATAGACGAAAGGAGATGGAACGAAAGAGGAGCAGGGAAAGAGAGTTGGAGAGGGGGGATAGGAGGAGGGAAAGGGATGTGGAAAGAGATAGGAGAGGGAAGGAAAGAGGTTGGAGTAGGGAAAGAGAGGGGCAAAGAGATAGAAGAGTGGAGAGGGAAAGAGGTTGGAGCAGGGAAAGAGAAGCAGAAAGGGATAGAAGAACGGAGAAGGAGAGAGGTTGGAGCAAAGAAAGAGAGGTGGACAGGGATAGAAGAGCAGAAAAGGAAAGATGTAGGAGCACCGATAGAGAGGGTAATAGGGATAGAAGAAGAGAAAGGGAAAAAGATAGGAGCAAGGATAAAGAAGTGGATTGGGATGGGAGAAGGGACAGGGATCGGAATGATGATAAGGCTGAATATAGTGATAGAAATAGAGACAGGGAGAGAGTGAGAGAGGTGCAAAAGGATCGGTTTAGGGATAAAGAATTAGATAGGGAGAGACACAACGATAGAAACAAGAATAAAGCCAGTGACAGTTTAAGTAGTAAAGATAAGTATGGGAATCTTGAACATGGCTACGTTAAAGGTTCTAAGCAGTCTAGGCATTACGATAATGAGTTTGGTTTGGATGGGGGAAGAATTAATGCTGTCGAAAAACATGGTAGTTTTAAGAGAAGCACTCGTGAAGAAGGTGAAGACAAGCTAATGAGTGGTCATGATGAGGAGGAAGAGGATGGAGACGGCATGTCATATCAATTAGCTGATGAAGAAGAGGAGGATCTTAACAGGATCAAAGAGGAGAGTAGAAGACGGAGACAAGCAATCTTAGAAAAATATAAATGCCAGCAGTTAGAGAAACAAGTAGAGGCTTCTATGAAGGAATCTGAGAAAGATAAGGATTCTGGAAAGGATTCTTCTCAATCAGAAGCTGCAGCTCATGCTATTCCAGAATTGGTTGATGGGGTAGTGGATGATTCTGTTGCTGACTCATCTTTTGTTGTGGAGAAATCACCACAACAAAATGGAGCAATTGCATCTGATAAAACTGCGGGTACTAAAGGACTTGGAGAGGGTACTCCAAAGGCTGAGGGGTCAGATGGATTATTCTGTGATGACATTTTTGGAGAAACACCTGCTGCAGTTCGTAAAATGGGAAAAAGTGATGGTTTGCAGATAGAGAGGAGTGGTCTTCATGACAATTGGGATGATGCAGATGGATATTATAACTATCGATTTGGGGAAGTGCTTGATAGTCGGTATGAAATTGCTGCTGCTCATGGAAAAGGTGTCTTTTCAACCGTGGTCCGTGCAAAGGATCTCAAAGCCGGTCCTGGTGAACCAGAAGAAGTGGCAATCAAAATTTTGCGTAGTAATGAAACAATGTACAAGGCTGGTCTGGAGGAGTTGGTCATATTGAAAAAGCTAGTAGGTGCAGATCCAGATGACAAGCGTCACTGTGTTCGTTTTCTTTCAAGTTTCAAATATAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTCATATGAATCTCCGTGAGGTCTTGAAGAAATTTGGGCGCAATATTGGCCTTAAGCTAACTGCTGTGAGGGCATACGCTAAGCAGCTTTTTATTGCCCTGAAGCATTTGAGAAATTGTGGTGTTCTCCACTGTGATATAAAGCCAGATAATATGCTGGTTAACGAGGGGAAAAATGTGCTGAAGCTTTGTGATTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAATCACACCCTACCTTGTTAGCCGGTTTTATCGTGCTCCTGAAATAATTTTAGGGCTGTCATATGATCATCCAATGGATATCTGGTCGGTGGGTTGCTGTCTGTACGAGCTCTCTACAGGGAAAGTTCTTTTTCCAGGTCCTTCTAATAATGACATGCTTCGCCTACACATGGAATTAAAGGGCCCTTTTCCAAAGAAGATGCTTCGTAAGGGAGCATTTACTGACCAACATTTTGACCAGGACTTGAACTTCCATGCTTCTGAGGAGGATCCTGTAACCAAAAAGACCATAAAGCGAATAATAGTCAATATAAAGCCTAAAGATATTGGGTCAATTATTAGGGGATCTCCTTGTGAAGATCCAAAGATGTTAGCCAATTTTAAGGATCTTCTAGACAAAATTTTTGTGTTGGATCCAGAAAAAAGGATGACGGTATCACAAGCATTGAATCATCCATTCATCACTGTCTTCTTTATGATGACCTAA 3408 42.93 MANDTAHRKHHRSASDEDDDKSSKRHKHRHHRRHHRHRHSSNKNEEESCRDREDSVPPAANRRSRPEDDVEEGEILEEDESGVRENEGATKEVDVEFGKPEADEISDRIDQPSMECHSVDESSNNQANFIVKEGAGNGAQDQKTSKMDSKFYNLDMDKGGYYLKKGTNKENMILYQTDSGCKHGNDASFSMSEVAGTKYNNIEHCREGHSKVDCDQESLELDEKLHKQMASPSKGASKKISNNGNGKVATDGNTLGNGKRPQLERTEGKSEDFTPSTSHDRFIDASDCRSRSRSNCHSRGQSQSRETVEEEAESKSRHYHGWDQPMFDDKIKIHNDLDDDYTECVRGEGRHRSRDTKDNGRSKMELDREWSKENEMGKNKDKDRGVDKQKYDERERGRSKDRRKEMERKRSRERELERGDRRRERDVERDRRGKERGWSREREGQRDRRVERERGWSREREAERDRRTEKERGWSKEREVDRDRRAEKERCRSTDREGNRDRRREREKDRSKDKEVDWDGRRDRDRNDDKAEYSDRNRDRERVREVQKDRFRDKELDRERHNDRNKNKASDSLSSKDKYGNLEHGYVKGSKQSRHYDNEFGLDGGRINAVEKHGSFKRSTREEGEDKLMSGHDEEEEDGDGMSYQLADEEEEDLNRIKEESRRRRQAILEKYKCQQLEKQVEASMKESEKDKDSGKDSSQSEAAAHAIPELVDGVVDDSVADSSFVVEKSPQQNGAIASDKTAGTKGLGEGTPKAEGSDGLFCDDIFGETPAAVRKMGKSDGLQIERSGLHDNWDDADGYYNYRFGEVLDSRYEIAAAHGKGVFSTVVRAKDLKAGPGEPEEVAIKILRSNETMYKAGLEELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEGKNVLKLCDFGNAMFAGKNEITPYLVSRFYRAPEIILGLSYDHPMDIWSVGCCLYELSTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLNFHASEEDPVTKKTIKRIIVNIKPKDIGSIIRGSPCEDPKMLANFKDLLDKIFVLDPEKRMTVSQALNHPFITVFFMMT* 1136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27227096 27237383 - CsaV3_5G034190.1 Csa05g02600 530987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02600 1135 SMART serkin_6 813 1128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02600 1135 MobiDBLite consensus disorder prediction 610 628 - -
Csa05g02600 1135 PANTHER DUAL SPECIFICITY PROTEIN KINASE 486 1129 - -
Csa05g02600 1135 MobiDBLite consensus disorder prediction 82 115 - -
Csa05g02600 1135 MobiDBLite consensus disorder prediction 262 294 - -
Csa05g02600 1135 Pfam Protein kinase domain 818 1128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02600 1135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 940 952 IPR008271 GO:0004672|GO:0006468
Csa05g02600 1135 SUPERFAMILY Protein kinase-like (PK-like) 800 1129 IPR011009 -
Csa05g02600 1135 MobiDBLite consensus disorder prediction 226 327 - -
Csa05g02600 1135 MobiDBLite consensus disorder prediction 344 601 - -
Csa05g02600 1135 MobiDBLite consensus disorder prediction 727 756 - -
Csa05g02600 1135 MobiDBLite consensus disorder prediction 649 699 - -
Csa05g02600 1135 Gene3D Phosphorylase Kinase; domain 1 783 872 - -
Csa05g02600 1135 MobiDBLite consensus disorder prediction 303 327 - -
Csa05g02600 1135 CDD STKc_PRP4 812 1128 IPR044092 GO:0004674|GO:0006468|GO:0045292
Csa05g02600 1135 Gene3D Transferase(Phosphotransferase) domain 1 873 1129 - -
Csa05g02600 1135 ProSiteProfiles Protein kinase domain profile. 813 1128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02600 1135 MobiDBLite consensus disorder prediction 25 39 - -
Csa05g02600 1135 MobiDBLite consensus disorder prediction 234 260 - -
Csa05g02600 1135 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 486 1129 - -
Csa05g02600 1135 MobiDBLite consensus disorder prediction 629 648 - -
Csa05g02600 1135 MobiDBLite consensus disorder prediction 1 24 - -
Csa05g02600 1135 MobiDBLite consensus disorder prediction 344 710 - -
Csa05g02600 1135 MobiDBLite consensus disorder prediction 1 122 - -
Csa05g02600 1135 Coils Coil 644 667 - -
Csa05g02600 1135 MobiDBLite consensus disorder prediction 40 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02600 K08827 PRPF4B; serine/threonine-protein kinase PRP4 [EC:2.7.11.1] - csv:101220260 2068.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02600 Csa-Chr5:27227096 Csa06g00186 Csa-Chr6:1245447 2.29E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 10 7 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78279 PF00069 Pkinase 3.10E-46 CL0016 Csa PK