Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02604 ATGAAGATTTTTGTCAAGACTCTCAAGGGCTCACACTTCGAAATCGAAGTTCAGCCTGCAGATACGGTTGCTGATGTGAAGAAAAACATAGAAACTGTTCAGGGTGCTGATGTTTACCCTGCAGCACAGCAGATGCTTATCCATCAAGGGAAAGTCCTTAAAGATAGCTCAACACTGGAGGAAAATAAAGTTGCAGAAAATAGTTTTATTGTAATAATGTTAACAAAGAATAAAAGTTCATCAGGTGGGACATCTTCTACCACACATGCTGCGCCAGTAGCAAAGGCACCACAGAGCACTGCCCCTGCACCTGCTGCTACTCCAGTGTCAACTACTGAAGTTCCATTACCAACTTCAGCACCGCCTGCTAGTGTTACTGCTTCTTCTCCTCCCGCTCCCTCTCCCACTCCTGTTCCTGTTCCTGCTCCTGCTCCTGCTCCTACTCCTACTCCTACTCCTACTCCGGCTGCAGCTCCAGCTCCATCTCTTGCAACTACTGTTTTGCCGGATGCCGATGTCTATAGCCAAGCAGCTTCTAACCTGGTTGCTGGTAGTAACTTGGAGGAGACTGTCCAACAGATTCTTGACATGGGCGAAGGGGTTTGGGACAGGGACACTGTTGTTCGGGCGCTCCGTGCTGCTTACAACAATCCAGAAAGGGCTGTTGATTACCTTTATTCTGGAATACCTGAACAAGTTGAAGCCCCACCTGCTCGAGTTCCGTCTACCGTGCAAGCAAGCAACCCTTCTGCTCAACCTGCACAGCCAGCCCAACCTGCATCTGCGCCGTCATCGACTGGCCCAAATGCTAATCCATTAGATCTCTTTCCTCAGGGCTTGCCTAATCTTGGTTCCGGAGCTGTTGGTTCCGGCAGTCTTGATTTTCTACGAAATAGTCCTCAGTTCCAAGCTTTGCGAGCAATGGTCCGAGCTAACCCTCAGATACTCCAGCCTATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGCTGATTAGGCTTATTCAAGATCATCAACCTGACTTCCTTCGCTTGATTAATGAGCCCCTCGAAGGAGAAGGGAATATACTTGGGCAGCTAGCTGAGGCTATGCCCCAGGCTATAACTGTAACCCCGGAGGAGCGTGAAGCCATTCAACGGCTTGAGGATATGGGTTTCGACAGAGGTCTAGTTGTGGAGGTTTTCTTTGCATGCAACAAAAACGAGGAAATGGCTGCCAACTATCTTTTAGATCATATCCACGAATTTGAGGGTAATCAGAACTAA 1263 48.3 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLEENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKAPQSTAPAPAATPVSTTEVPLPTSAPPASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPDADVYSQAASNLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEAPPARVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVGSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNILGQLAEAMPQAITVTPEEREAIQRLEDMGFDRGLVVEVFFACNKNEEMAANYLLDHIHEFEGNQN* 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27250343 27257589 - CsaV3_5G034230.1 Csa05g02604 530991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02604 420 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 131 - -
Csa05g02604 420 PANTHER UV EXCISION REPAIR PROTEIN RAD23 124 416 - -
Csa05g02604 420 MobiDBLite consensus disorder prediction 241 272 - -
Csa05g02604 420 MobiDBLite consensus disorder prediction 103 123 - -
Csa05g02604 420 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 370 411 IPR015940 -
Csa05g02604 420 SUPERFAMILY XPC-binding domain 289 354 IPR036353 GO:0003684|GO:0006289|GO:0043161
Csa05g02604 420 MobiDBLite consensus disorder prediction 78 94 - -
Csa05g02604 420 CDD UBA1_Rad23_plant 181 230 - -
Csa05g02604 420 SUPERFAMILY UBA-like 184 233 IPR009060 GO:0005515
Csa05g02604 420 Gene3D - 285 348 IPR036353 GO:0003684|GO:0006289|GO:0043161
Csa05g02604 420 SMART CBM 291 334 IPR006636 -
Csa05g02604 420 Pfam UBA/TS-N domain 373 408 IPR015940 -
Csa05g02604 420 Pfam UBA/TS-N domain 187 225 IPR015940 -
Csa05g02604 420 Pfam XPC-binding domain 293 348 IPR015360 GO:0003684|GO:0006289|GO:0043161
Csa05g02604 420 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Csa05g02604 420 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Csa05g02604 420 SUPERFAMILY UBA-like 353 415 IPR009060 GO:0005515
Csa05g02604 420 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 185 228 IPR015940 -
Csa05g02604 420 MobiDBLite consensus disorder prediction 236 278 - -
Csa05g02604 420 PANTHER EXCISION REPAIR PROTEIN RAD23, PUTATIVE-RELATED 124 416 - -
Csa05g02604 420 PANTHER EXCISION REPAIR PROTEIN RAD23, PUTATIVE-RELATED 1 131 - -
Csa05g02604 420 MobiDBLite consensus disorder prediction 78 162 - -
Csa05g02604 420 MobiDBLite consensus disorder prediction 124 158 - -
Csa05g02604 420 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Csa05g02604 420 Gene3D - 365 412 - -
Csa05g02604 420 SMART uba_6 187 227 IPR015940 -
Csa05g02604 420 SMART uba_6 373 410 IPR015940 -
Csa05g02604 420 Gene3D - 1 80 - -
Csa05g02604 420 TIGRFAM rad23: UV excision repair protein Rad23 1 416 IPR004806 GO:0006289
Csa05g02604 420 PRINTS DNA repair protein Rad23 signature 319 341 IPR004806 GO:0006289
Csa05g02604 420 PRINTS DNA repair protein Rad23 signature 367 383 IPR004806 GO:0006289
Csa05g02604 420 PRINTS DNA repair protein Rad23 signature 384 398 IPR004806 GO:0006289
Csa05g02604 420 PRINTS DNA repair protein Rad23 signature 399 414 IPR004806 GO:0006289
Csa05g02604 420 Gene3D - 180 230 - -
Csa05g02604 420 CDD Ubl_Rad23 1 74 - -
Csa05g02604 420 SMART ubq_7 1 75 IPR000626 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02604 K10839 RAD23, HR23; UV excision repair protein RAD23 - csv:101220491 671.003
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03884 Csa-Chr3:34118253 Csa05g02604 Csa-Chr5:27250343 1.17E-139 dispersed
Csa05g02604 Csa-Chr5:27250343 Csa04g00847 Csa-Chr4:5961645 1.36E-08 dispersed
Csa05g02604 Csa-Chr5:27250343 Csa02g01755 Csa-Chr2:17137021 3.79E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41