Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02613 ATGACAACAAGGAAAAGTGTGGAGAGAACAGCAGAGGGAGGCAAGACTGCCAGAGCCTGTGATAGCTGTATCAGCAAGCGGGCTCGGTGGTACTGCGCTGCCGATGATGCTTTTCTGTGCCAAGCTTGTGATGCTTCAGTCCACTCCGCCAACTCCTTGGCACGTAGACACGAGCGAGTTCGTCTTCAAACTGCCTCCTTCAGACCCTCTTCAGACAACTCCTCTGCTGCCTCATGGCACCAGGGCTTCACCAAAAAGCCACGGTCGCCTCGAATGGGAAAGACTGCTCCGACGAGGAAACCATTTCCACAGGTACCGGAGGTTAGTGCTAAAGAAGAATCTGAAGAACAAGAACAGCTTCTCCTTCACAGAGTTCCTGTATTGGGAGCTGATTCAAAGGATGGCAATTTGGCTAGTTTTGTTGGGGAAAAAGAAAGCTCAAATGGTTATCTCTCGTATGATATGGATCCTGCTGAATTCGCAGCTGATGTTGAGAGTTTATTGGGAAACTCGCTTGATAATGAGTGCTTTGATATGGAAGAACTGGGGCTAGTAGCTTCCAAAGACCACTCATTGACAAACGATGATTATTCTTTAAACAGCCATGAAATTATTAAGATTGAACCAGATGAGATAGAGGTATTAACTCCGATGCTCGGCATAGAAGCCGATACGATGAGGGAGCCATTTGAGCTGAACTTTATGGACTTTGGCAGCAATCCGACAACGTGCAGTGAGGAAGATGACAAGATGATGATGGAAGTTATGGCAGTAGTGAAGAACGGTGAACTTGAGATGGAGGAGACAAAGATTGTTAAAAACAAAAAGAAAGTATCATTGAGTTTGGATAGTGAAGCAGTGATTATAGCTTGGGGAAGTAGAGGAACTCCATGGACATCCGGTGATCGACCGAATCTCGACCTCGATTATTACTGGCCGGACTACATGGGTACGTATGAGAGTGATTGTTACTATCAACCTTATGGGGAGTTTGGCAGCGGAATTGGGCGACAAGCGGTAACCGGAGTCGAAGGAGAGAGAGAAGCACGAGTGTCAAGGTACAGAGAGAAGAGAAGGACGAGATTATTCGCAAAGAAAATAAGATATGAAGTTAGGAAATTGAATGCAGAGAAGAGACCGAGAATGAAAGGGAGGTTTGTAAAGAGATCGTCATGCTTTGCGCCACCACCTTTGCCTTTATTTAATCAATGA 1212 45.87 MTTRKSVERTAEGGKTARACDSCISKRARWYCAADDAFLCQACDASVHSANSLARRHERVRLQTASFRPSSDNSSAASWHQGFTKKPRSPRMGKTAPTRKPFPQVPEVSAKEESEEQEQLLLHRVPVLGADSKDGNLASFVGEKESSNGYLSYDMDPAEFAADVESLLGNSLDNECFDMEELGLVASKDHSLTNDDYSLNSHEIIKIEPDEIEVLTPMLGIEADTMREPFELNFMDFGSNPTTCSEEDDKMMMEVMAVVKNGELEMEETKIVKNKKKVSLSLDSEAVIIAWGSRGTPWTSGDRPNLDLDYYWPDYMGTYESDCYYQPYGEFGSGIGRQAVTGVEGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRSSCFAPPPLPLFNQ* 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27321989 27323306 + CsaV3_5G034320.1 Csa05g02613 531000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02613 403 ProSiteProfiles CCT domain profile. 347 389 IPR010402 GO:0005515
Csa05g02613 403 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 395 - -
Csa05g02613 403 MobiDBLite consensus disorder prediction 65 116 - -
Csa05g02613 403 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Csa05g02613 403 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 395 - -
Csa05g02613 403 CDD Bbox1_BBX-like 19 62 - -
Csa05g02613 403 Pfam CCT motif 347 389 IPR010402 GO:0005515
Csa05g02613 403 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Csa05g02613 403 MobiDBLite consensus disorder prediction 65 82 - -
Csa05g02613 403 SMART bboxneu5 15 62 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02613 - - - csv:101212689 816.224
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00665 Csa-Chr2:5109713 Csa05g02613 Csa-Chr5:27321989 1.65E-17 dispersed
Csa05g01867 Csa-Chr5:21937871 Csa05g02613 Csa-Chr5:27321989 7.12E-18 dispersed
Csa05g02613 Csa-Chr5:27321989 Csa01g02115 Csa-Chr1:18437986 2.55E-07 dispersed
Csa07g00378 Csa-Chr7:2810583 Csa05g02613 Csa-Chr5:27321989 5.86E-11 dispersed
Csa01g02551 Csa-Chr1:22464221 Csa05g02613 Csa-Chr5:27321989 1.15E-21 transposed
Csa01g00380 Csa-Chr1:2364830 Csa05g02613 Csa-Chr5:27321989 1.28E-77 wgd
Csa05g02613 Csa-Chr5:27321989 Csa06g00354 Csa-Chr6:2826773 1.64E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g308 . . . . . Bpe10g00936 Bma14g01712 Bma15g00088 Cmo04g01578 Cmo18g01030 . Cma18g01020 Car04g01559 . Sed08g0353 Cpe09g00303 Cpe01g01788 Bhi07g01322 Tan04g0850 Cmetu03g1640 Lac13g0498 Hepe01g1190 . . Cla05g02298 . . Cco05g2536 . . . . . Cone13ag0287 Cone19ag0279 Lsi04g00253 Csa05g02613 Chy10g01148 Cme10g00258 Blo06g00962 Blo11g00848 Bda07g01539 . Bpe11g01703 . . Bma06g01024 . Cmo04g02148 . Cma04g02049 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002023 2 2 2 3 2 2 4 2 2 2 2 2 4 2 2 4 2 2 2 2 2 2 1 2 1 2 2 4 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31844 PF00643 zf-B_box 2.10E-07 No_clan Csa TF