Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02614 ATGAGAATGAGTTGCAATGGGTGTCGGATTCTTCGTAAAGGATGTAGCGACGACTGTATAATTAGACCTTGTCTTCAATGGATTCCCTCCTCCGATTCTCAAGCCAACGCCACCATTTTTCTCGCCAAATTTTATGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCCAACACCTCCGCCCTGCCATTTTCAAGTCATTGCTGTACGAGGCGTGCGGTCGGATGGTGAATCCGGTGTACGGTTCTGTTGGATTGCTGTGCTCCGGCGACTGGGAACGTTGTCAGGCAGCCGTCGACGCCGTCTTGAACGGATCCATGAACGTCGAACCAGATACGCCGCCGTCAAACAACGGTAACCTTTCCCTCAAATGCTGCGACATTCGCCACGTTTGTAACGAACCCAATTTGGCTGCTTCCGGCGATCTTCTCAAGGTCAAGGGTCGTAGCCGGTTCAAGAAGCCTGATCATCGAACCAAACCAAAACCCGGGCCGGATCATGACTTAGGAATTGGGTCTAGTTTTGATGAAGCGGGCCGGGATGTGAGCAATGGAAGCCGGTTTGAGAAGGCCGACGACGTTGAGCTGGAATTGACTCTTAAATCGGCTCAGTAA 618 53.07 MRMSCNGCRILRKGCSDDCIIRPCLQWIPSSDSQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPDTPPSNNGNLSLKCCDIRHVCNEPNLAASGDLLKVKGRSRFKKPDHRTKPKPGPDHDLGIGSSFDEAGRDVSNGSRFEKADDVELELTLKSAQ* 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27325928 27327384 - CsaV3_5G034330.1 Csa05g02614 531001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02614 205 MobiDBLite consensus disorder prediction 150 191 - -
Csa05g02614 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 41-LIKE 1 169 - -
Csa05g02614 205 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Csa05g02614 205 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Csa05g02614 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02065 Csa-Chr3:16836290 Csa05g02614 Csa-Chr5:27325928 1.38E-65 dispersed
Csa04g02468 Csa-Chr4:24675485 Csa05g02614 Csa-Chr5:27325928 2.79E-46 dispersed
Csa05g02614 Csa-Chr5:27325928 Csa06g03011 Csa-Chr6:25950641 3.21E-49 dispersed
Csa01g00381 Csa-Chr1:2368012 Csa05g02614 Csa-Chr5:27325928 3.21E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31845 PF03195 LOB 6.00E-23 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02614 - - csv:101212446 428.328