Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02624 ATGGAGAAGAGAGTAATGGTGGCCATAGACGAGAGTGAGTATAGCTACTATGCCCTAATCTGGGTGCTTGAAAATCTTAAAGAATCCATAGCCAGTTCCCCACTTTTCCTCTTCACGGCTCTACCTCCGCCCCCCACCACTTACACCTCCGGCCTCGCTCGCTCCTATTTCCCACTTCCATCCAATACGGAGTTTGTTCGTACTCTTCAAGAGAATGATAAGAAACTTAGATGCGGTCTTCTTGAGAAAGCAAAGGATATATGTGCTGGAAGAGGGGTGGCTGCTATATCCATCACAGAAGATGGGGACCCTGGAAAGACCATATGTGATACGGTTGAAAAGCTGAATATAAGTTTGCTTGTTTTGGGTGATCGTGGCCTTGGGAGAATTAAGAGAGCTCTTATAGGGAGTGTGAGTAACTATTGCGTTCAAAATGCCAAGTGTCCTGTCCTTGTTGTGAAGAAACCATAG 471 45.86 MEKRVMVAIDESEYSYYALIWVLENLKESIASSPLFLFTALPPPPTTYTSGLARSYFPLPSNTEFVRTLQENDKKLRCGLLEKAKDICAGRGVAAISITEDGDPGKTICDTVEKLNISLLVLGDRGLGRIKRALIGSVSNYCVQNAKCPVLVVKKP* 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27382048 27383070 - CsaV3_5G034430.1 Csa05g02624 531011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02624 156 PANTHER UNIVERSAL STRESS PROTEIN A-LIKE PROTEIN 2 156 - -
Csa05g02624 156 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 2 156 - -
Csa05g02624 156 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 3 155 - -
Csa05g02624 156 CDD USP_Like 4 153 - -
Csa05g02624 156 Pfam Universal stress protein family 3 154 IPR006016 -
Csa05g02624 156 Gene3D HUPs 1 156 IPR014729 -
Csa05g02624 156 PRINTS Universal stress protein signature 2 20 IPR006015 -
Csa05g02624 156 PRINTS Universal stress protein signature 114 126 IPR006015 -
Csa05g02624 156 PRINTS Universal stress protein signature 132 154 IPR006015 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02624 - - - csv:101218192 303.908
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01913 Csa-Chr5:22287874 Csa05g02624 Csa-Chr5:27382048 8.49E-19 dispersed
Csa05g02624 Csa-Chr5:27382048 Csa07g01831 Csa-Chr7:18498590 3.92E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g322 . . . . . . . . . . . . . . . . . Bhi07g01312 . . Lac13g0509 . . . . . . . . . . . . . . . Csa05g02624 Chy10g01159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007321 0 6 0 0 0 1 1 1 1 2 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 0 1 1 0 3 36