Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02629 ATGGAATCATCTTCCACAAACCTTCCAATGGAATCTCCTATACTCATCTTTCTCTTCTTCCATAAGGCTATACGCGCTGAGCTTGATCACTTTCATACCGACGCTGTCCAATTTGCCACTAATAACCAAACTGCTGGGGATATTGCTCCCTTGTTGCACCGCTACCACTTCCTTCGAGCTGTTTATAAGCACCACTGTAAAGCTGAGGACGAGGTCATCTTCCCGGCTCTAGATCTGCGAGTGAAAAATGTGGCAACTACTTATTTCCTTGAACATGAAGGTGAAAGTGTTCTGTTTTGCCAATTGTTCGAGCTTCTGAATTCAAATGGGTTGGAGGAAGGAAGCTATAAGAGGGAGCTGTCATCTCGTGTTAAAGCTCTTCAGATATCAATATGCCAGCATATGTTTAAGGAAGAGGAACAGGTGTTCCCTTTACTTACTAAGAAGTTTTCTTTTGAAGAACAGGCAGCATTAGTATGGAAATTTCTTTGTAGTATACCTATTAATATGCTGGTAGTCTTTCTTCCGTGGATTTCTTCCTCTATATCTCCAGATGAGCATCAGATTATGTGCAAATGCTTGAGTAAAATTATCCCTGAGAAAAAGCTTCTTCAGAAGATAATATTTTCATGGATGGAGGGTGCGAAAACAGCTCATGCCAATCAAAGTTCGTATGATGACAATTTAGAGTTTCAATCTCTAGGCTCTCAGGTCCATGATCTTATATGTATGCCAGAGAAGGGGAGTGACACTTCTGAACCAACTAGAATTGGTAAAAGGAAATACGTGGAGCAAAGTAATTTTACTTATTCTACTGTTTCAGATGCTTGCCCTATCAATGAAATATTATATTGGCATAATGCTATAAGAAAAGAACTAAATTGCATCGCTGAGGCAGCTAGGAACCTACCTCTGTCTTCTGATTTTTCTGAGTTATCTGCACTTAAGGAGAGGCTGCAGTTTATCACAGAAGTCTGCATCTTCCACTGCATTGCTGAGGATAAAGTTATATTCCCTGCTGTAGATGCTGAACTATCTTTTGCTGATCAGCATGCAGAAGAAGAGATTCAATTTGATAAGCTTAGGCATTTGATTGAATGTATCCAAGCTGATAAAGTTAAGTGTTCTTCTGCTGAAATTCATAAAAAGTTAAGTTCTCATGCCGATCAAATTATCGAGACCATCCAGAAGCACTTCCATGATGAGGAAATGCATGTCCTTCCACTTGCTTGTAAGCATTTTGGACACCAAAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATAATGCCCCTGAAATGGGTAGAACGAATCTTACCTTGGTTGGTAGAAACTCTTACTGAAAAAGAAGCAAGATCTTTTCTTCAGAATATGCAAATGGCAGCTCCAGTGTCGGATCATGCACTTGTTACACTATTTTCTGGTTGGGCATGCAAAGGCCGACCCAGGAGCATTTGTTTATCTGTAAGTGCTATTGACCGTTGTCCTGAACTGATATTGACTGGGGATGAAGAATCATGCTCCTCCTTTTGTTCTGCCAGTGAAAAACATTCATGCAATCTGGCAACTGAGTGTGCCAGGTCATCCAAGGGTGGGAAGGCAGTATGCCATGGCGACTCAAATGGCCGTCTTCCTTTGAAAAACCCAAGCAAAAAACTTCAAATCACTTGTGTAAAACGATCTTCTTGTGTCCCTGGGTTAGGAGTGGATCATGACAATAATTTAGGAATGAGATCTATGGCAGCAACAAAATCACTGCATTCTTTGTGTTTTGGTCTCTATGCTCCTTCTCTCAACTCCAGTCTTTTTAGTCTGGAAACGAATCCAGTCTCTCTTGGCAGTGGTTCTAACCCACAGCCTATTGATAACATATTTACATTTCATAAAGCAATAAGGAAAGACTTGGAGTATTTGGATAATGAATCTGTGAATCTCGGTGATTGCAATGATACTTTCTTTAGGCAATTTTGCGGTAGGTTTTATCTATTATGGGGCCTATATAAAGCTCATAGTAATGCAGAGGATGATATAGTATTTCCTGCATTAGAATCAAAAGAAGCTCTTCATAATGTGAGTCACTCTTATACATTAGACCACAAACAGGAGGAAGAGCTCTTTGAAGGTATTTCTAGTGCACTATCTAAGCTGGCAGACCTTCGCAGAGACTTGAAAGGTAATAAAAAGTGTAATAATTCAAGTTGCATGAAGTTTCATAACTCTGATAGTTGTGATACTGTGAGAATGAATATTGAGCTGGCAACAAAGCTCCAGGGCATGTGCAGATCAATTCGAGTTACACTTGACCAGCATATTTTCCGTGAGGAATCAGAATTGTTGCCGTTGTTCCATACATATTTTTCTCTGGATGAACAGGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTTCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTCAGGAGGAGCAAAATAAGATGATGGATACATTGAAGCAGGCAACCAGGAATACAATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGAACCTGCTACATCTCCACATCACGAGGAATCTGTCATTCATTTATCTGGAGGTTCTAATTCCCATGGCAGCTGTGACCAAAAAAATGATTCGATTTTCAAGCCAGGGTGGAAAGAGATATTTAGGATGAATGAAAATGAACTCGAGTCAGAAATAAGAAAGGTTGTCAAGGATTCAACCATTGACCCCAGGAGAAAAGATTATCTTATCCAGAACTTGATGACCAGTCGTTGGATAGCTTCACAGCAAATGCTACCCCAAGCCACTACAGGTGAAAACACAAATGCAAGAGATCCAATTGCAAATGCCCCATCATTTCGCAATCCTAAGGAGCAGATTTTTGGGTGTGAGCATTATAAAAGAAATTGCAAACTGCTTGCAACTTGTTGTGGCAAGTTGTTTACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATTCAATGGATAGGAAGGTTTCAACTGAAATGATGTGTATGCAATGCCTCAAAGTTCAGCCTATTGGATCTGTTTGTACAACACCATCCTGCGGTGGTCTCTCTATGGGGAAGTACTACTGTGGCATTTGCAAAGTTTTCGACGATGAAAGGGAAGTTTATCATTGTCCTTTTTGCAATCTATGTCGTCTTGGGAAGGGACTTGGTACTGATTTTTTCCATTGTATGACATGCAACTGTTGCTTAGCAATGAAGTTGGTTGATCACAAATGCCAGGAGAAGGGCCTAGAGACAAATTGCCCTATCTGCTGTGATTTTTTGTTCACGTCTAGTGAAAGTGTTAGAGCTCTCCCTTGTGGCCATTTCATGCATTCGGCTTGTTTCCAGGCTTACACTTGTAGCCACTACATATGCCCAATATGTAGCAAGTCCTTGGGAGATATGACGGTATACTTTGGCATGCTTGACGCGTTACTGGCATTGGAAGTACTTCCTGAGGAATACAGGGAACGCTGTCAGGATATATTGTGCAACGATTGCTCCATGAAGGGGAAAGCGCGGTTCCATTGGCTCCACCATAAATGTGGAAGTTGTGGATCTTACAATACCAAGGTGATTAAGGTTAGCTCAAGTTCCTGA 3618 40.77 MESSSTNLPMESPILIFLFFHKAIRAELDHFHTDAVQFATNNQTAGDIAPLLHRYHFLRAVYKHHCKAEDEVIFPALDLRVKNVATTYFLEHEGESVLFCQLFELLNSNGLEEGSYKRELSSRVKALQISICQHMFKEEEQVFPLLTKKFSFEEQAALVWKFLCSIPINMLVVFLPWISSSISPDEHQIMCKCLSKIIPEKKLLQKIIFSWMEGAKTAHANQSSYDDNLEFQSLGSQVHDLICMPEKGSDTSEPTRIGKRKYVEQSNFTYSTVSDACPINEILYWHNAIRKELNCIAEAARNLPLSSDFSELSALKERLQFITEVCIFHCIAEDKVIFPAVDAELSFADQHAEEEIQFDKLRHLIECIQADKVKCSSAEIHKKLSSHADQIIETIQKHFHDEEMHVLPLACKHFGHQRQRELLYHSLCIMPLKWVERILPWLVETLTEKEARSFLQNMQMAAPVSDHALVTLFSGWACKGRPRSICLSVSAIDRCPELILTGDEESCSSFCSASEKHSCNLATECARSSKGGKAVCHGDSNGRLPLKNPSKKLQITCVKRSSCVPGLGVDHDNNLGMRSMAATKSLHSLCFGLYAPSLNSSLFSLETNPVSLGSGSNPQPIDNIFTFHKAIRKDLEYLDNESVNLGDCNDTFFRQFCGRFYLLWGLYKAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEELFEGISSALSKLADLRRDLKGNKKCNNSSCMKFHNSDSCDTVRMNIELATKLQGMCRSIRVTLDQHIFREESELLPLFHTYFSLDEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTLKQATRNTMFSDWLNEWWEEPATSPHHEESVIHLSGGSNSHGSCDQKNDSIFKPGWKEIFRMNENELESEIRKVVKDSTIDPRRKDYLIQNLMTSRWIASQQMLPQATTGENTNARDPIANAPSFRNPKEQIFGCEHYKRNCKLLATCCGKLFTCSFCHDKVSDHSMDRKVSTEMMCMQCLKVQPIGSVCTTPSCGGLSMGKYYCGICKVFDDEREVYHCPFCNLCRLGKGLGTDFFHCMTCNCCLAMKLVDHKCQEKGLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMTVYFGMLDALLALEVLPEEYRERCQDILCNDCSMKGKARFHWLHHKCGSCGSYNTKVIKVSSSS* 1206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27419065 27425913 - CsaV3_5G034480.1 Csa05g02629 531016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02629 1205 ProSiteProfiles Zinc finger CHY-type profile. 957 1026 IPR008913 GO:0008270
Csa05g02629 1205 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1-LIKE 10 1204 - -
Csa05g02629 1205 CDD RING-H2_Pirh2 1092 1135 - -
Csa05g02629 1205 Pfam Zinc-ribbon 1140 1196 IPR039512 -
Csa05g02629 1205 Gene3D nmb1532 protein domain like 9 164 - -
Csa05g02629 1205 Gene3D nmb1532 protein domain like 281 425 - -
Csa05g02629 1205 ProSiteProfiles Zinc finger RING-type profile. 1093 1135 IPR001841 -
Csa05g02629 1205 Pfam CHY zinc finger 964 1039 IPR008913 GO:0008270
Csa05g02629 1205 CDD Hr-like 624 780 - -
Csa05g02629 1205 SMART ring_2 1093 1134 IPR001841 -
Csa05g02629 1205 ProSiteProfiles Zinc finger CTCHY-type profile. 1029 1092 IPR017921 -
Csa05g02629 1205 Pfam Hemerythrin HHE cation binding domain 620 781 IPR012312 -
Csa05g02629 1205 Pfam Hemerythrin HHE cation binding domain 281 410 IPR012312 -
Csa05g02629 1205 Pfam Hemerythrin HHE cation binding domain 18 146 IPR012312 -
Csa05g02629 1205 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 10 1204 - -
Csa05g02629 1205 Gene3D - 1164 1204 - -
Csa05g02629 1205 CDD Hr-like 16 144 - -
Csa05g02629 1205 Pfam Ring finger domain 1092 1134 IPR001841 -
Csa05g02629 1205 Gene3D nmb1532 protein domain like 616 845 - -
Csa05g02629 1205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1088 1137 IPR013083 -
Csa05g02629 1205 SUPERFAMILY Zinc hairpin stack 1030 1085 IPR037275 -
Csa05g02629 1205 CDD Hr-like 281 408 - -
Csa05g02629 1205 SUPERFAMILY RING/U-box 1092 1139 - -
Csa05g02629 1205 SUPERFAMILY CHY zinc finger-like 958 1020 IPR037274 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00206 Csa-Chr1:1326160 Csa05g02629 Csa-Chr5:27419065 1.11E-12 dispersed
Csa05g02629 Csa-Chr5:27419065 Csa06g01237 Csa-Chr6:10422841 2.39E-51 dispersed
Csa01g00396 Csa-Chr1:2454211 Csa05g02629 Csa-Chr5:27419065 2.59E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02629 K16276 - csv:101217252 2489.15