Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02630 ATGGAGATAGCCCCATCGATTGTTTGTAGTGGCCCGCCCATTTGTCCGTTGAATGGTAATGGAAACAGAGGCCCTGGACGGACGCCGTTGGATTGGACGACGAGGTTGAAGATCGCCGCCGGGGCAGCTAGAGGATTGGCTTTTATTCACAATTCCTGCAAGTCCCTCAAGCTCGCACATGGCAATGTTAAATCCACCAACGTTCTTTTGGACCAATCCGGAAACGCTCGAGTCTCTGATTACGGATTGTCCCTTTTCACTCCCCCTTCCACTCCCAGAACCAACGGCTACCGTGCGCCGGAATGCGGTGATGACCGAAAACTGACCCAGAAATCCGACGTGTACTCATTTGGGGTTCTTCTCCTTGAGTTGCTGACAGGAAAATGCCCCTCCGTCGTGGAGAACGGCGGGCCAGGAGGCGGTGGATACGGCAGCGTATTGGATTTGCCACGATGGGTTCAGTCAGTGGTGCGAGAGGAATGGACGGCGGAGGTTTTTGATTTGGAGCTGATGAGATACAAAGACATCGAAGAGGAAATGGTGGGGCTTCTGCAGATTGCCTTGGCTTGTACAGCCGCTTCGCCAGATCAACGGCCAAAGATGAACCACGTGGTGAAGATGATCGACGAGCTCCGTGGGGTTGAGGTGTCGCCGTTCCATGACGGGTCTGACTCAGTGACGGAATCGCCGTCGGTTTCGGAGGGAACATGCGGCGGAGGAGGCAGTCAGTAA 732 54.78 MEIAPSIVCSGPPICPLNGNGNRGPGRTPLDWTTRLKIAAGAARGLAFIHNSCKSLKLAHGNVKSTNVLLDQSGNARVSDYGLSLFTPPSTPRTNGYRAPECGDDRKLTQKSDVYSFGVLLLELLTGKCPSVVENGGPGGGGYGSVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALACTAASPDQRPKMNHVVKMIDELRGVEVSPFHDGSDSVTESPSVSEGTCGGGGSQ* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27427391 27428144 - CsaV3_5G034490.1 Csa05g02630 531017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02630 243 SUPERFAMILY Protein kinase-like (PK-like) 27 208 IPR011009 -
Csa05g02630 243 Gene3D Transferase(Phosphotransferase) domain 1 21 224 - -
Csa05g02630 243 MobiDBLite consensus disorder prediction 218 243 - -
Csa05g02630 243 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 21 226 - -
Csa05g02630 243 SMART tyrkin_6 6 208 IPR020635 GO:0004713|GO:0006468
Csa05g02630 243 MobiDBLite consensus disorder prediction 222 243 - -
Csa05g02630 243 ProSiteProfiles Protein kinase domain profile. 1 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02630 243 PANTHER - 21 226 - -
Csa05g02630 243 Pfam Protein tyrosine and serine/threonine kinase 29 207 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02630 Csa-Chr5:27427391 Csa03g03364 Csa-Chr3:30424877 9.37E-73 dispersed
Csa05g02630 Csa-Chr5:27427391 Csa01g02093 Csa-Chr1:18117705 2.04E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78280 PF07714 PK_Tyr_Ser-Thr 1.30E-18 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02630 - - csv:101217010 445.662