Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02631 ATGGCGGCTTCTACTTCGCTGTCGCATTTTGCTTGTTTTGTATCTTTTCTCTACTTTACATGTGTTTATGCCTCTTCGAACATAGATTTAGATGCTTTAGTGGCGTTCAAAGCAGCTTCTGATAAAGGGAATAAGCTAACCACATGGAACTCTACTTCTAACCCATGTGCTTGGGATGGTGTTTCTTGCCTCAGAGACAGGGTCTCGAGGTTGGTTCTTGAGAACCTTGATCTTACAGGCACTATCGGACCTCTTACTGCTTTGACTCAGTTACGTGTTCTGAGTCTCAAGCGGAACCGTCTCTCTGGTCCCATTCCCGATCTCTCCAACTTCAAAGCTCTCAAACTTGTATTTCTTTCCTACAATGCATTTTCTGGTAACCTCCCGGCTTCTCTTCTGTCCCTCGTCCGGCTTTACCGTCTCGATCTCTCTCACAATAACCTGACTGGAGAGATACCGGCTTCTGTTAACCGTCTGACTCATCTTCTCACTCTCCGGCTCGAAGATAACCGGTTTTCTGGACCCATTTTGGAACTGAACCTTCCGAATCTTCAGGACTTCAATATTTCGGAGAATCGTCTCTCCGGCGAAATCCCCAAATCGTTGTCGGCATTTCCTGAGTCTTCGTTTGGACAGAACATGGGTTTATGTGGATCTCCTCTTCAGAGTTGCAAGAGCATTGTCAGTAAACCGACGGAACCTGGATCAGAAGGGGCAATTGCTTCACCCATTACACCGCCACGGAACCTCACGGTTTCATCTTCTCCGACTTCCCTTCCCGAAGTTACAGCCGAAACAAAGCCGGAAAATACCCACCATCATGGCACGGGAAAGATAGGTTCTCTAGCTTTAATAGCTATAATTCTTGGCGACGTTGTGGTGTTAGCGTTGGTCTCGCTTCTTCTCTACTGCTATTTTTGGAAAAATTCTGCTGATAAAGCCCGAGAAGGTAAGGGCTCGTCGAAGCTCCTTGAGAGCGAGAAGATTGTTTACTCTTCTAGTCCATATCCGGCTCAGGCCGGAACTGAGAGAGGCCGAATGGTGTTCTTCGAGGGAGTCAAGAAGTTTGAGCTCGAAGATTTGCTTCGAGCCTCTGCGGAAATGCTCGGAAAAGGTGGTTTCGGAACTTCGTACAAGGCGATTCTGGACGACGGAAATGTGGTGGCGGTGAAACGGCTGAAAGATGCGCAGGTTGGAGGGAAACGAGAGTTCGAGCAGCACATGGAAGTTTTGGGAAGGTTAAGACATGCAAATATTGTAAGCTTGAGAGCTTACTATTTTGCTAGAGAGGAGAAGTTATTGGTATATGATTACATGCCCAATGGCAGCTTGTTCTGGCTTCTTCATGGGTTAATAATTTTGAGCGGTGTCAATTCCCAGACAAGGGAGCAACATTTATGGCCGTATCGAAAGTGTTGGATTAGTAGCAGCTTATCTGCAAATTTGGAGTGGGGATTTTTAGATTTTTACTATTCACAATGGAGGAACAGAGTGCCATGCCCTACCAAATAA 1512 46.36 MAASTSLSHFACFVSFLYFTCVYASSNIDLDALVAFKAASDKGNKLTTWNSTSNPCAWDGVSCLRDRVSRLVLENLDLTGTIGPLTALTQLRVLSLKRNRLSGPIPDLSNFKALKLVFLSYNAFSGNLPASLLSLVRLYRLDLSHNNLTGEIPASVNRLTHLLTLRLEDNRFSGPILELNLPNLQDFNISENRLSGEIPKSLSAFPESSFGQNMGLCGSPLQSCKSIVSKPTEPGSEGAIASPITPPRNLTVSSSPTSLPEVTAETKPENTHHHGTGKIGSLALIAIILGDVVVLALVSLLLYCYFWKNSADKAREGKGSSKLLESEKIVYSSSPYPAQAGTERGRMVFFEGVKKFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQVGGKREFEQHMEVLGRLRHANIVSLRAYYFAREEKLLVYDYMPNGSLFWLLHGLIILSGVNSQTREQHLWPYRKCWISSSLSANLEWGFLDFYYSQWRNRVPCPTK* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27428234 27429917 - CsaV3_5G034500.1 Csa05g02631 531018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02631 503 Pfam Protein kinase domain 366 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02631 503 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 23 450 - -
Csa05g02631 503 PANTHER - 23 450 - -
Csa05g02631 503 MobiDBLite consensus disorder prediction 246 265 - -
Csa05g02631 503 Pfam Leucine rich repeat N-terminal domain 29 63 IPR013210 -
Csa05g02631 503 MobiDBLite consensus disorder prediction 230 275 - -
Csa05g02631 503 SUPERFAMILY L domain-like 44 204 - -
Csa05g02631 503 Gene3D Ribonuclease Inhibitor 179 226 IPR032675 -
Csa05g02631 503 Gene3D Ribonuclease Inhibitor 26 178 IPR032675 -
Csa05g02631 503 SUPERFAMILY Protein kinase-like (PK-like) 367 450 IPR011009 -
Csa05g02631 503 Gene3D Phosphorylase Kinase; domain 1 338 438 - -
Csa05g02631 503 ProSiteProfiles Protein kinase domain profile. 363 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa05g02631 Csa05g01191 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02631 Csa-Chr5:27428234 Csa03g03364 Csa-Chr3:30424877 5.16E-91 dispersed
Csa05g02631 Csa-Chr5:27428234 Csa01g02093 Csa-Chr1:18117705 2.06E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78281 PF00069 Pkinase 2.60E-11 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02631 - - csv:101217010 870.922