Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02632 ATGGCTTCCAGAGAAGGAAGACGTCATCATAATCATCGTCATCACAATCTGGTGCCTCTTGCTGCTTTGATTAGTAAAGAGGTGAGGAGTGAGAGATTGGAGAAACCGACTGTAAGATATGGGAATGCAGCGCAGTCTAGAAAAGGGGAAGACTACTTTCTCATGAAAACTGATTGTCAGCGAGTTCCTGGGAACCCTTCATCCACTTTCTCAGTATTTGCTATATTTGATGGACACAATGGAAATGCTGCAGCAATTTTCACGAGGGAACATTTGTTGACTCATGTCTTGGGTGCACTTCCCCGTGGTCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCACGAGCTTTGGTTGCTGGATTTGTGAAGACAGACAAGGAGTTTCAGAGCAGAGGTGAAACTTCTGGAACTACAGCTACATTTGTGATCATCGATGGATGGACGGTAACAGTAGCATCAGTTGGCGATTCTCGATGTATTTTAGATACTCAAGGTGGTGCTGTCTCTGCTTTAACGGTTGATCATCGACTTGAAGAGAATGTTGAAGAGAGAGAACGTGTGACTGCAAGCGGTGGGGAAATTGGAAGATTAAGTATTGTTGGCGGTGCTGAGATCGGCCCACTCCGTTGTTGGCCAGGAGGCTTATGCCTTTCTCGATCCATTGGAGACATGGATGTTGGAGAATTTATAGTTCCAATTCCATTTGTGAAACAAGTAAAGTTACCAAATGCAGGTGGGAGGCTTATAATTGCTTCTGACGGCATCTGGGATGCCTTATCATCAGATATGGCTGCAAAGTCCTGCCGTGGACTACCGGCAGAGCTTGCTGCTAGGCAAGTTGTGAAGGAAGCCTTGAGAACAAGAGGCTTGAAAGATGATACAACCTGCATAGTTGTAGACATCATCCCTCCTGATAATTCAGCACAGTCTTCCCCTCTTCCAAAGAAACAAAGCGTACTGAAATCTCTATTATTTAGGAAAAAGTCTCCCAGTTCTAATAAGTTATCGAAAAGGCTTTCGGCTATAGGTTTTGTGGAAGAATTATTCGAAGATGGCTCCGCTATGCTGGCTGAAAGGCTTGGAACTGTAGAGTTGAGTGGATCTGGACATGGGACACCAAACATGTTCACTTGTGTTGTATGTCAAGTAGATCTTGCTCCCAGTGAGGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCATGGCAAGGGCCTTTCCTTTGTGCCGATTGTCGAAACAAGAAGGATGCCATGGAAGGAAAACGTCCCAGCGGGGTAAGAGTGGCGTAG 1302 46.08 MASREGRRHHNHRHHNLVPLAALISKEVRSERLEKPTVRYGNAAQSRKGEDYFLMKTDCQRVPGNPSSTFSVFAIFDGHNGNAAAIFTREHLLTHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLPNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSAQSSPLPKKQSVLKSLLFRKKSPSSNKLSKRLSAIGFVEELFEDGSAMLAERLGTVELSGSGHGTPNMFTCVVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGVRVA* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27433334 27436954 - CsaV3_5G034510.1 Csa05g02632 531019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02632 433 SMART PP2C_SIG_2 34 301 IPR001932 -
Csa05g02632 433 PANTHER ALPHABET, ISOFORM E-RELATED 8 433 - -
Csa05g02632 433 SMART PP2C_4 29 299 IPR001932 -
Csa05g02632 433 Pfam Protein phosphatase 2C 65 286 IPR001932 -
Csa05g02632 433 Gene3D - 36 308 IPR036457 -
Csa05g02632 433 PANTHER PROTEIN PHOSPHATASE 2C 15-RELATED 8 433 - -
Csa05g02632 433 SUPERFAMILY PP2C-like 46 301 IPR036457 -
Csa05g02632 433 CDD PP2Cc 48 301 IPR001932 -
Csa05g02632 433 ProSiteProfiles PPM-type phosphatase domain profile. 32 301 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02730 Csa-Chr1:24189935 Csa05g02632 Csa-Chr5:27433334 0 dispersed
Csa04g02396 Csa-Chr4:24244336 Csa05g02632 Csa-Chr5:27433334 1.66E-174 dispersed
Csa05g02632 Csa-Chr5:27433334 Csa02g02502 Csa-Chr2:22052604 2.87E-27 dispersed
Csa05g02632 Csa-Chr5:27433334 Csa03g02203 Csa-Chr3:19119262 2.70E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02632 - - csv:101216777 841.262