Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02634 ATGGCGTCATTCTGTTTCGTTTTGTCCTTTGTTCTCTCTCATCTAGTGGCACTTTCGTTGGCTTGGAATGATACCAGATACGTTCATCCAATTTGCACGCCCTTCGAATGTGGAAATCTGGGCCTCATAGGATTCCCTTTTAACAATATGTCGCTGACTGATTGTGGATTTTACACAGTTAAAAACTGCTCGGGACAGCCTAAAATCCAGCTCAATCGTGGAAAAGAATTATGGTTTGATGTTACTACCATTTCTCAGGCCAATGTCATCCATATCAATGACCAAGAACTTCGGAAGCGAATAAATGCTCGCAATTGCACTATTCTCGATGATCTAGCTCTTCCAATATCTTCTTTGTCTTCTTTATCCACAGATAACAATCTTACTATGTATTATTGTACAGAAAAACCTAAAGACGCTTTACCTCTTTTCATCAGTTCATTTAATTGCCCTGATTACTACACATACCTCAACACTAGTGCTTCACCCAACTGTCTCACTTCCAAGTCTAAATTTGTTGTTCCAGTTCGCCCCGTTGGTCCCAATAACTCAATTGTTGTGTTTACTTCTGATTTCCAACTTCAAGTAACCATATCCATTCCTTGTCAACAATGTTTTCATAGAGGAGGCCAATGCTCGGATACCCCAGGATACTTCGTTTGTGAAGGTGAAAACACAAAAAGTAGAAAAGATCAACTTAAGAAATTGAAGATTGCACTAGGTGCTGGATTCTCAGGTGTAATTTTGCTTTTGTTATTATTTGCTCTTTGGTACCGCAGAAGAAGGCGGCCTGCTCCGAATATCCTAACAAGGAATATATCTTGTGAACCCTACTCAAAATTTGACGTAGATGATGGTGGTGGTGTGTGCTTTGAAGTCCCTGTTTTCTCATATACCGAACTCGAGACGGCCACTAACAAATTTGATCGTGATAAAGAACTTGGTGATGGTGGTTTTGGAACCGTGTACCACGGCAAACTCCATGATGGCCGGGAAGTTGCTGTGAAACGTCTTTATCAACATAACTATAGACGAGTAGAGCAATTCATGAATGAGGTTAAAATTCTCTCCCGCTTTCGCCATAGAAATCTCGTCTCCCTTTATGGATGTACTTCAAAACGCAGTCGGGAACTTCTCCTCGTTTATGAATTTATTCCAAATGGCACTGTTGCTGATCATCTCCATGGAGAACAGGCAAGTTCTAGCTTGCTTACATGGCCTATTCGGATGAACATTGCCATTGAAACAGCAAGTGCTTTAGTTTATCTCCATGCTTCGGATATCATTCATCGTGATGTGAAGACTACTAATATTCTCTTAGATAATAATTTCTCTGTCAAAGTTGCTGATTTTGGGCTCTCTAGATGGTTCCCAAACGATGTTAGTCATGTCTCAACTGCTCCTCAAGGGACCCCTGGTTATGTGGATCCCGAGTATTACCAGTGTTATCAGCTTACAACCAAGAGTGATGTTTATAGTTTCGGCGTCGTATTAATCGAGCTTATTTCGTCAATGCCAGCTGTTGATATAACAAGGCATCGACATGAGATTAACTTGTCTAACTTAGCTGTGAACAAAATTCTAAGACAGGAAATTGACGAGCTGGTCGATCCATGCCTTGGGTATCAATCGGATGAAAACGTTAGACGGATGATAATGGGAGTGGCCTGGCTAGCTTTTCTATGTCTGCAGCAAGACAAGGAAAGAAGACCTACAATGGAAGAAGCCTTAGAAACTTTGAAGAGGATTGAGAATGGGGAAGAAAGTGAGAATTTGCTAGATAACAGTGCATTGTTGAAGAGCTATAATCCAACTCCTTCTCCAGAGTATGATGAGATTCAATTGTTGAAGAACAAAACGCAGCAGTTGTTGTCCCCTACTTCTGTTGCTGATAAATGGATAAGCTCAACTTCATTTGTTAGTGCTTCAACTTCAATATCATCTAAGTCCTAA 1953 40.66 MASFCFVLSFVLSHLVALSLAWNDTRYVHPICTPFECGNLGLIGFPFNNMSLTDCGFYTVKNCSGQPKIQLNRGKELWFDVTTISQANVIHINDQELRKRINARNCTILDDLALPISSLSSLSTDNNLTMYYCTEKPKDALPLFISSFNCPDYYTYLNTSASPNCLTSKSKFVVPVRPVGPNNSIVVFTSDFQLQVTISIPCQQCFHRGGQCSDTPGYFVCEGENTKSRKDQLKKLKIALGAGFSGVILLLLLFALWYRRRRRPAPNILTRNISCEPYSKFDVDDGGGVCFEVPVFSYTELETATNKFDRDKELGDGGFGTVYHGKLHDGREVAVKRLYQHNYRRVEQFMNEVKILSRFRHRNLVSLYGCTSKRSRELLLVYEFIPNGTVADHLHGEQASSSLLTWPIRMNIAIETASALVYLHASDIIHRDVKTTNILLDNNFSVKVADFGLSRWFPNDVSHVSTAPQGTPGYVDPEYYQCYQLTTKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNLAVNKILRQEIDELVDPCLGYQSDENVRRMIMGVAWLAFLCLQQDKERRPTMEEALETLKRIENGEESENLLDNSALLKSYNPTPSPEYDEIQLLKNKTQQLLSPTSVADKWISSTSFVSASTSISSKS* 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27440239 27442766 - CsaV3_5G034530.1 Csa05g02634 531021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02634 650 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Csa05g02634 650 Pfam Protein kinase domain 309 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02634 650 CDD STKc_IRAK 314 583 - -
Csa05g02634 650 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 16 635 - -
Csa05g02634 650 Gene3D Phosphorylase Kinase; domain 1 285 384 - -
Csa05g02634 650 Gene3D Transferase(Phosphotransferase) domain 1 385 602 - -
Csa05g02634 650 SMART serkin_6 308 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02634 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Csa05g02634 650 SUPERFAMILY Protein kinase-like (PK-like) 293 610 IPR011009 -
Csa05g02634 650 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 16 635 IPR044652 -
Csa05g02634 650 ProSiteProfiles Protein kinase domain profile. 308 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02634 - - - csv:101216540 1260.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01858 Csa-Chr4:18320320 Csa05g02634 Csa-Chr5:27440239 7.46E-151 dispersed
Csa05g02634 Csa-Chr5:27440239 Csa06g02887 Csa-Chr6:25086747 4.91E-89 dispersed
Csa05g02634 Csa-Chr5:27440239 Csa05g02636 Csa-Chr5:27446431 0 proximal
Csa02g02560 Csa-Chr2:22403360 Csa05g02634 Csa-Chr5:27440239 1.28E-164 transposed
Csa01g00680 Csa-Chr1:4352931 Csa05g02634 Csa-Chr5:27440239 1.34E-152 wgd
Csa01g00398 Csa-Chr1:2483778 Csa05g02634 Csa-Chr5:27440239 5.36E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g347 . . . . . . . . . Cmo18g01013 . Cma18g01002 . Car18g00924 . . . Bhi07g01296 . . . . . . Cla05g02281 . . . . . . . . . . Lsi04g00234 Csa05g02634 . Cme10g00237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007318 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78282 PF00069 Pkinase 1.70E-48 CL0016 Csa PK