Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02636 ATGAGTGATATCAAATTCCGTTTCGCTCTGTTTTTTGTTCTCTCTCATATAGTGGCACTTTCGTTGGCTTGGAATGATACCAGATACGTTCATCCAATTTGCACGCCCTTCGAATGTGGAAATCTGGGCCTCATAGGATTCCCTTTTAACAATATGTCGCTGACTGATTGTGGATTTTACACAGTTAAAAACTGCTCGGGACAGCCTAAAATCCAGCTCAATCGTGGAAAAGAATTATGGTTTGATGTTACTACCATTTCTCAGGCCAATGTCATCCATATCAATGACCAAGAACTTCGGAAGCGAATAAATGCTCGCAATTGCACTATTCTCGATGATCTAGCTCTTCCAATATCTTCTTTGTCTTCTTTATCCACAGATAATAATCTTACTATGTATTATTGTACAGAAAAACCTAAAGACGCTTTACCTCTTTTCATCAGTTCATTTAATTGCCCTGATTATTACACATACCTCAACACTAGTGCTTCACCCAACTGTCTCACTTCCAAGTCTAAATTTGTTGTTCCAGTTCGCCCCGTTGGTCCCAATAACTCAGTTCTTGAGTTTACTTCTAATTTCCAACTTCAAGTAACCATATCCGTTTCTTGTCAAGGATGTTTTCATAGAGGAGGCCGATGCTCGGATACCCAAGGATACTTCGTTTGTGAAGGTGAAAACACAAAAAGTAGAAAAGCAAAACCTGATATTTGGGGGATTGCACTAGGGAGCTTTACTACGGTAATATCCATCATCATCATCTTCATCATCATCTACAACAAAACAAAAGGCATGTCAAACAAAAACAAAATTAATGAAGTCATTGGAAGATATTCAACCCACACTCCCAAGCGATACACTCACTCAAAGCTAAAGAAAATCACAAACTCCTTCAAGAACAAGCTTGGCCAAGGAGGATTCAGCTCTGTCTACAAAGGGAAATTACCCGATGGCCGTGAAGTGGCAGTGAAACTACTGAATGAATGCACAGAAAACGATGAAGACTTCATGAATGAAGTCGTTAGCATCACAAGAACTTCACACGTAAACATAGTCAAGCTTTTTGGTTTCTGCTACGAACAGGGAAAAAGAGCATTGGTTTATGAGTACATGTCTAAAGGGTCATTAGATAAGTACATTTTTCAAAGAGGGCAACAAAAAGAAAATGAACAAGTTTTGGATTGGAAAATGTTGAATAGCATAGTTATGGGCGTAGCACGAGGATTAGAGTACCTGCATCGAGGCTGCAACACGAGGATTTTTCATTTTGACATCAAACCACACAACATTCTTTTGGACGATGACTTCTGTCCCAAAATCTCGGATTTCGGGCTTGCCAAGCAATGCAAGGCTAGAGAGAGTCACGTGTCGATGACGGGTGCAAAGGGGACTGCGGGATTTATGGCGCCAGAAGTAATGTATAGAAACTTTGGCAAAGTTTCGCATAAGTCTGATGTTTATAGTTTTGGAATGTTGGTTCTTGAGATGGTGGGTGAAAGAAAGAGACCAGATGAATTAAGAGTTGGGGAGATCAGCGAAGAAGAGTACTTCCCGGATTGGATATATAAGGATTTGGAAAAAAGTGGAATAGATAGAGCGCATTGGTGGGGAAGAACGGAGGAAGAACAAGAAATGGCAAGAAAAATGATCATTGTCGGACTGTGTTGTATACAGACGTTGCCGGAGGACAGGCCATCAATAAGCGATGTGGTTGAGATGTTGGAAGGGAGTGTTGATAACTTACAAATTCCGGCCAAGCCGACCTTATTTGGACCTCCTGCTATCTTTCTCCACCCTCCTCCTTCTTCTTCTTCTTCATCCTTGTAA 1827 40.78 MSDIKFRFALFFVLSHIVALSLAWNDTRYVHPICTPFECGNLGLIGFPFNNMSLTDCGFYTVKNCSGQPKIQLNRGKELWFDVTTISQANVIHINDQELRKRINARNCTILDDLALPISSLSSLSTDNNLTMYYCTEKPKDALPLFISSFNCPDYYTYLNTSASPNCLTSKSKFVVPVRPVGPNNSVLEFTSNFQLQVTISVSCQGCFHRGGRCSDTQGYFVCEGENTKSRKAKPDIWGIALGSFTTVISIIIIFIIIYNKTKGMSNKNKINEVIGRYSTHTPKRYTHSKLKKITNSFKNKLGQGGFSSVYKGKLPDGREVAVKLLNECTENDEDFMNEVVSITRTSHVNIVKLFGFCYEQGKRALVYEYMSKGSLDKYIFQRGQQKENEQVLDWKMLNSIVMGVARGLEYLHRGCNTRIFHFDIKPHNILLDDDFCPKISDFGLAKQCKARESHVSMTGAKGTAGFMAPEVMYRNFGKVSHKSDVYSFGMLVLEMVGERKRPDELRVGEISEEEYFPDWIYKDLEKSGIDRAHWWGRTEEEQEMARKMIIVGLCCIQTLPEDRPSISDVVEMLEGSVDNLQIPAKPTLFGPPAIFLHPPPSSSSSSL* 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27446431 27448629 - CsaV3_5G034550.1 Csa05g02636 531023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02636 608 Gene3D Transferase(Phosphotransferase) domain 1 371 585 - -
Csa05g02636 608 Gene3D Phosphorylase Kinase; domain 1 259 370 - -
Csa05g02636 608 SUPERFAMILY Protein kinase-like (PK-like) 273 575 IPR011009 -
Csa05g02636 608 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 11 591 - -
Csa05g02636 608 Pfam Protein tyrosine and serine/threonine kinase 298 574 IPR001245 GO:0004672|GO:0006468
Csa05g02636 608 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Csa05g02636 608 ProSiteProfiles Protein kinase domain profile. 296 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02636 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Csa05g02636 608 SMART serkin_6 296 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02636 608 PANTHER RUST RESISTANCE KINASE LR10-RELATED 11 591 IPR045874 GO:0004672
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00685 Csa-Chr1:4367399 Csa05g02636 Csa-Chr5:27446431 1.02E-172 dispersed
Csa04g01860 Csa-Chr4:18336690 Csa05g02636 Csa-Chr5:27446431 4.05E-106 dispersed
Csa05g02636 Csa-Chr5:27446431 Csa05g01971 Csa-Chr5:23094044 3.14E-76 dispersed
Csa05g02634 Csa-Chr5:27440239 Csa05g02636 Csa-Chr5:27446431 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78283 PF07714 PK_Tyr_Ser-Thr 1.40E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02636 - - csv:101210246 1197.57