Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02641 ATGGCAAAAATTCCTTCAGTATCCTTTTTTTTTCTCCTCTGCAACTTATTATGTCTTTCTATGGCTTCTTTGAACAATGAAGGCAATGCCCTTTTATCATTCAAGCAATCCATTACTGAAGACCCGGAGGGATGTCTTAGCAACTGGAATTCTTCAGATGAAACCCCATGTAGTTGGAATGGAGTTACATGCAAAGATCTAAGAGTTGTTTCTCTTAGTATTCCTAGGAAGAAACTTAATGGGGTTCTTTCTTCTTCTCTAGGGTTTCTGTCTGAGCTTCGTCATGTGAATCTGAGGAGTAATAAACTCCATGGAACTTTGCCAGTGGAGCTTTTTCAAGCTAATGGAATTCAAAGTTTGGTGCTTTATGGAAATTCCTTCACTGGGTCTGTTCCAAATGAGATTGGTAAGCTAAAAAACCTTCAAATCTTTGATTTGTCACAGAATTTCCTTAATGGGTCATTGCCTGTTTCCTTAATGCAATGTACAAGGTTGAGAATTCTTGATCTTAGTCAGAATAATTTTACTAATTCTCTGCCTAGTGGGTTTGGTTCCAGTTTGAATTTCTTGGAAACGTTGGATCTTTCTTATAATAAGTTTAATGGTTCAATTCCAATGGATATTGGTAATTTGTCTAGCTTACAAGGCACTGTTGATTTCTCACATAATTTGTTTTCTGGCTCTATCCCACCCAGCCTGGGCAACCTTCCTGAAAAGGTTTATATTGATCTTACTTATAATAATTTGAGTGGTTCAATACCCCAAAATGGTGCTCTTATGAACAGAGGACCAACTGCTTTTATTGGGAATCCTGGCCTTTGTGGACCGCCGTTGAAGAACCCATGTTCTTCCGAAACTCCGGGTGCGAGTTCTCCGTCCTCATTCCCTTTTTTCCCGGACAATTATCCGCCTGGGAGTTCTGAGGGTAATGGTCATAAGTTTGACAAAGGTGGGTTGAGTAGGAGCACTTTAGTTGCAATAATCATAGGCGACATTGTAGGTATTTGCCTCATCGGTTTGCTGTTTTCGTATTGCTATTCGAGGTTTTGCACTCATAGAAATGGGAAGAAGGCAGACCAATCTAGTTATGGATTTGAGAAGGGTGAGAAAGGAAGAAAGGATTGTCTCTGCTTTCAAAAGAGTGAATCTGAGAACGTTTCAGAGCATATCGAGCAGTTTGATTTGGTACCACTGGATTCACAAGTGACATTTGATCTTGACGAACTTCTCAAGGCATCAGCATTTGTTTTGGGAAAAAGTGGTATCGGGATCGTGTATAAAGTCGTGCTTGAAGATGGACTCACTTTAGCTGTGAGAAGATTGGGTGAAGGTGGTTCTCAAAGATTAAAAGAATTTCAAACTGAAGTTGAAGCAATTGGGAGGTTGAGGCATCCAAATGTTGTTAGCCTTAGAGCATATTATTGGTCTGTTGATGAGAAACTGCTTATTTACGATTACATCCCAAATGGGAACCTTGCATCTGCCGTTCATGGGAAGCCCGGAACAACGTCGTTTACACCTCTACCATGGTCTGTTCGGTTTGGAATCATGATAGGCATTGCAAAAGGGTTGGTTTACTTGCACGAGTATAGCCCCAAAAAGTACGTTCATGGTAATTTGAAAACAAACAACATACTTCTTGGACACGACATGACACCAAAAATTTCTAATTTCGGGCTAGCCCGCCTTGTTAACATTGCTGGAGGATCACCAACCGTGCAATCGAGCCATATAGCAGAGGAAAAATCACAAGAGAAACAACTGAAGTCTGCCACCTCTGAAGCTAGTACATTCAGTTCTAGTATGAGTACTTACTACCAAGCCCCTGAAGCGTTGAAAGTCGTGAAGCCATCACAGAAATGGGACGTTTACTCATATGGTGTGATATTACTCGAAATGATCACCGGAAGATTGCCCATAGTTCAAGTGGGAACGTCAGAAATGGATCTTGTTCAATGGATTCAACTCTGCATTGAAGAAAAGAAGCCGCTTTCAGACGTAATAGACCCGTCATTGGCTCCAGACGACGATGCTGACGAGGAGATCATAGCGGTTTTGAAGATAGCATTAGCTTGTGTTCAAAATAATCCAGAAAGAAGACCTGCAATGAGGCATGTTTGTGATGCTTTGGGCAAGTTGGCTGTCACTCCAAACTAA 2157 41.08 MAKIPSVSFFFLLCNLLCLSMASLNNEGNALLSFKQSITEDPEGCLSNWNSSDETPCSWNGVTCKDLRVVSLSIPRKKLNGVLSSSLGFLSELRHVNLRSNKLHGTLPVELFQANGIQSLVLYGNSFTGSVPNEIGKLKNLQIFDLSQNFLNGSLPVSLMQCTRLRILDLSQNNFTNSLPSGFGSSLNFLETLDLSYNKFNGSIPMDIGNLSSLQGTVDFSHNLFSGSIPPSLGNLPEKVYIDLTYNNLSGSIPQNGALMNRGPTAFIGNPGLCGPPLKNPCSSETPGASSPSSFPFFPDNYPPGSSEGNGHKFDKGGLSRSTLVAIIIGDIVGICLIGLLFSYCYSRFCTHRNGKKADQSSYGFEKGEKGRKDCLCFQKSESENVSEHIEQFDLVPLDSQVTFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRLKEFQTEVEAIGRLRHPNVVSLRAYYWSVDEKLLIYDYIPNGNLASAVHGKPGTTSFTPLPWSVRFGIMIGIAKGLVYLHEYSPKKYVHGNLKTNNILLGHDMTPKISNFGLARLVNIAGGSPTVQSSHIAEEKSQEKQLKSATSEASTFSSSMSTYYQAPEALKVVKPSQKWDVYSYGVILLEMITGRLPIVQVGTSEMDLVQWIQLCIEEKKPLSDVIDPSLAPDDDADEEIIAVLKIALACVQNNPERRPAMRHVCDALGKLAVTPN* 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27467713 27470823 + CsaV3_5G034600.1 Csa05g02641 531028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02641 718 PANTHER OS05G0588300 PROTEIN 18 716 - -
Csa05g02641 718 Gene3D Phosphorylase Kinase; domain 1 377 486 - -
Csa05g02641 718 SUPERFAMILY L domain-like 26 279 - -
Csa05g02641 718 SMART LRR_typ_2 187 211 IPR003591 -
Csa05g02641 718 SMART LRR_typ_2 138 162 IPR003591 -
Csa05g02641 718 SMART LRR_typ_2 163 186 IPR003591 -
Csa05g02641 718 SMART LRR_typ_2 90 114 IPR003591 -
Csa05g02641 718 CDD STKc_IRAK 417 713 - -
Csa05g02641 718 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Csa05g02641 718 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 18 716 - -
Csa05g02641 718 ProSiteProfiles Protein kinase domain profile. 411 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02641 718 Gene3D Ribonuclease Inhibitor 18 76 IPR032675 -
Csa05g02641 718 Gene3D Ribonuclease Inhibitor 77 285 IPR032675 -
Csa05g02641 718 Gene3D Transferase(Phosphotransferase) domain 1 487 716 - -
Csa05g02641 718 SUPERFAMILY Protein kinase-like (PK-like) 416 710 IPR011009 -
Csa05g02641 718 Pfam Leucine rich repeat 118 175 IPR001611 GO:0005515
Csa05g02641 718 Pfam Protein kinase domain 417 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02220 Csa-Chr5:24983100 Csa05g02641 Csa-Chr5:27467713 0 dispersed
Csa05g02641 Csa-Chr5:27467713 Csa05g00862 Csa-Chr5:6592954 3.68E-96 dispersed
Csa02g02567 Csa-Chr2:22452986 Csa05g02641 Csa-Chr5:27467713 0 transposed
Csa03g01823 Csa-Chr3:13971854 Csa05g02641 Csa-Chr5:27467713 1.85E-135 transposed
Csa04g01050 Csa-Chr4:8380657 Csa05g02641 Csa-Chr5:27467713 6.56E-139 transposed
Csa05g02059 Csa-Chr5:23897339 Csa05g02641 Csa-Chr5:27467713 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78284 PF00069 Pkinase 1.40E-30 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02641 - - csv:101215811 1392.48