Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02643 ATGACTTCCAGCGGGGGCGAGGTTGACGTCAAGGGAGTGTTTATAGGAGCAGGCTGTAACAGAATAGTGAACAACGTTTCTTGGGGAGCCTGTGATTTAGTGGCTTTTGGCGCTCAAAACGCTGTTGCAATCTTCTCTCCTAAGTCTGCACAAATTTTGACTACTCTTCCCGGTCACAACGCCTCTGTCAACTGCACTCATTGGCTTCCAAGTAACAAGTTTTCGTTTAGAGCCAAGCAATTCAAGTCTCATTATCTACTTTCTGGTGACTCTGATGGTGCCATTCATTTATGGGAGTTGTCTCTTCTGGACCAGAAGTGGAGAAATGTTTTACAACTACCAAAATCACACAACAAAGGCATCACATGTATTGCTGCACATGTAATTTCTGAAACGGTGGTAATTTTTGCGTCTGCTTCTTCAGATGGTTCAGTTTGTGTTTGGGAGGTTGCTTTTCCGTCAACAAATGAAGGTGATTGTACATTGTTGTTACTGGACACACTCGTGGTTGGTTCAAAATCTATGGTGGCACTTTCATTAGCAGAATTGCCTGGAAATGTCGGTCATATGGTCCTGGCTATGGGAGGCTTGGATAATAAGATTCATCTGTATTGTGCGAAGAGAGCTGGAGAGTGCATGCAGTTTGTTAAGGCATGTGAGCTCAAAGGGCATACAGATTGGATTAGAAGTCTGGACTTCTCTTTGCCTATGGGGAAAAATGGAGAAGCAAACAACGTTATGCTTGTGAGTTCATCTCAGGACAGAGGCATACGCATATGGAAGATGGCTCTTCATGGTTCCTCAGCCGACATAAATGGAGGATGCAAAAAAGAAGAAATAAGTTTAACATCTTATATACAAGGTCCTATATTTACTGCCGGACCATTGACTTACCAGGTATCATTAGAGTCACTTTTGATTGGTCATGAGGATTGGGTATATTCGGTCCAATGGCAGCCGCCTTCAGCTTCAGAAACTGAAGGGATTCCATATCAATCTGAAAGCATCCTGTCTGCATCTATGGACAAGACAATGATGATTTGGAAGCCTGAAAAAACTTCTGGAATCTGGATGAATGTGGTTACTGTTGGAGAATTAAGTCATTGTGCTCTAGGGTTTTATGGTGGGCATTGGAGCCCTAATGGAGATTCAATTTTAGCACATGGTTATGGTGGGTCTTTTCATCTCTGGAGAAATGTTGGTACCAGTTCAGATAACTGGAAACCTCACAAAGTTCCCTCAGGACATTTTGCCGCTGTCATGGACATTTCATGGGCCAGATCTGGTGATTATATAATTTCAGTCAGCCATGACCAGACAACTCGGATTTTTTCTCCCTGGAAAAGTGTCAATTCTCTTGAAGGAGGTTCTTGGCATGAGATTGCTCGACCTCAAGTTCATGGTCACGATATTAATTGTGTCACCATAATACAAGGGAAGGGGAACCATCGGTTTGTGAGCGGAGCTGAGGAGAAAGTTGCTAGAGTCTTTGAAGCTCCATTATCTTTTTTGAAGACATTGAGTCATGCCACCCTAACGAATGTTGTGGCCAATGAAGATCACCTTGTGGATGTTCAGATTTTGGGTGCTAATATGTCGGCTCTTGGCCTTTCACAGAAACCTATTTATGTTCACTCTGCTGATAAGACACCAGACAGGAGTGGAAATGAAGGTATTGACACCCTCGAAACCATTCCCGATGCAGTTCCTGTCATTCTTACTGAACCTCCCATAGAAGATCAATTGGCATGGCATACACTTTGGCCAGAATCGCACAAACTTTATGGTCATGGGAATGAGCTATTTTCTCTATGTTGTGATAACAAGGGGAAGCTAGTTGCTTCATCCTGCAAGGCACAAACGGCATCAGTAGCAGAAATATGGCTTTGGGAAGTTGGTTCGTGGAAGGCAGTTGGTCGTTTGCAATCTCACAGCTTAACAATAACGCAAATGGAGTTTTCTAATGATGACAGTATGCTATTGGCAGTCTCAAGGGATCGCCAGTTCTCTGTTTTCAAAATCCACAGAACAGGCTCTGATGAAATCCACCATGAGCTTATATCAAGGCAGGAGGCACACAGAAGAATCATATGGTCATGCTCTTGGAACCCACATGGTCATGAGTTTGCAACTGGCTCTAGGGATAAAACTGTGAAGATATGGGCTGTGACACCTGAATCTTCAGTTAAGCAGCTAACAACTCTATCACAGTTTAAATCTAGTGTCACCGCTTTGTCATGGGTCGGTCTCGACTCCAAGAGCAATGGATTCCTTGCAATTGGAATGGAAAATGGCCTCCTTGAGTTGTGGAATTTGTCTATTAAAAGAACAGATAACATTTACTCAAATGTAGTTGCTTCAGTCGCTATACGTCTAGATCCGTTTGTGTGCCATGTTTCCTCGGTCAACCGTTTGGCATGGAAGAAGCCGGAGAAGAGTGGTGAAGAGTGCAGGAAACTGCAGTTCGCATCCTGTGGCACTGACCACTGCGTTAGAGTGTTTGAGGTAAATGTTTTTGTATGA 2523 43.48 MTSSGGEVDVKGVFIGAGCNRIVNNVSWGACDLVAFGAQNAVAIFSPKSAQILTTLPGHNASVNCTHWLPSNKFSFRAKQFKSHYLLSGDSDGAIHLWELSLLDQKWRNVLQLPKSHNKGITCIAAHVISETVVIFASASSDGSVCVWEVAFPSTNEGDCTLLLLDTLVVGSKSMVALSLAELPGNVGHMVLAMGGLDNKIHLYCAKRAGECMQFVKACELKGHTDWIRSLDFSLPMGKNGEANNVMLVSSSQDRGIRIWKMALHGSSADINGGCKKEEISLTSYIQGPIFTAGPLTYQVSLESLLIGHEDWVYSVQWQPPSASETEGIPYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWRNVGTSSDNWKPHKVPSGHFAAVMDISWARSGDYIISVSHDQTTRIFSPWKSVNSLEGGSWHEIARPQVHGHDINCVTIIQGKGNHRFVSGAEEKVARVFEAPLSFLKTLSHATLTNVVANEDHLVDVQILGANMSALGLSQKPIYVHSADKTPDRSGNEGIDTLETIPDAVPVILTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDNKGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQMEFSNDDSMLLAVSRDRQFSVFKIHRTGSDEIHHELISRQEAHRRIIWSCSWNPHGHEFATGSRDKTVKIWAVTPESSVKQLTTLSQFKSSVTALSWVGLDSKSNGFLAIGMENGLLELWNLSIKRTDNIYSNVVASVAIRLDPFVCHVSSVNRLAWKKPEKSGEECRKLQFASCGTDHCVRVFEVNVFV* 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27476230 27482283 + CsaV3_5G034620.1 Csa05g02643 531030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02643 840 SMART WD40_4 683 722 IPR001680 GO:0005515
Csa05g02643 840 SMART WD40_4 728 771 IPR001680 GO:0005515
Csa05g02643 840 SMART WD40_4 457 498 IPR001680 GO:0005515
Csa05g02643 840 SMART WD40_4 587 631 IPR001680 GO:0005515
Csa05g02643 840 SMART WD40_4 106 149 IPR001680 GO:0005515
Csa05g02643 840 SMART WD40_4 49 99 IPR001680 GO:0005515
Csa05g02643 840 SMART WD40_4 634 673 IPR001680 GO:0005515
Csa05g02643 840 SMART WD40_4 359 398 IPR001680 GO:0005515
Csa05g02643 840 SMART WD40_4 406 445 IPR001680 GO:0005515
Csa05g02643 840 SMART WD40_4 788 835 IPR001680 GO:0005515
Csa05g02643 840 SMART WD40_4 299 349 IPR001680 GO:0005515
Csa05g02643 840 SMART WD40_4 214 261 IPR001680 GO:0005515
Csa05g02643 840 PANTHER ELONGATOR COMPLEX PROTEIN 2 7 838 - -
Csa05g02643 840 ProSitePatterns Trp-Asp (WD) repeats signature. 86 100 IPR019775 -
Csa05g02643 840 Gene3D - 403 550 IPR015943 GO:0005515
Csa05g02643 840 Gene3D - 290 402 IPR015943 GO:0005515
Csa05g02643 840 Pfam WD domain, G-beta repeat 306 349 IPR001680 GO:0005515
Csa05g02643 840 Pfam WD domain, G-beta repeat 51 98 IPR001680 GO:0005515
Csa05g02643 840 Pfam WD domain, G-beta repeat 408 444 IPR001680 GO:0005515
Csa05g02643 840 Pfam WD domain, G-beta repeat 113 148 IPR001680 GO:0005515
Csa05g02643 840 Pfam WD domain, G-beta repeat 692 721 IPR001680 GO:0005515
Csa05g02643 840 Pfam WD domain, G-beta repeat 220 261 IPR001680 GO:0005515
Csa05g02643 840 Gene3D - 679 839 IPR015943 GO:0005515
Csa05g02643 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 262 IPR001680 GO:0005515
Csa05g02643 840 Gene3D - 577 678 IPR015943 GO:0005515
Csa05g02643 840 PRINTS G protein beta WD-40 repeat signature 86 100 IPR020472 -
Csa05g02643 840 PRINTS G protein beta WD-40 repeat signature 248 262 IPR020472 -
Csa05g02643 840 PRINTS G protein beta WD-40 repeat signature 709 723 IPR020472 -
Csa05g02643 840 PANTHER WD REPEAT-CONTAINING 7 838 - -
Csa05g02643 840 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 690 721 - -
Csa05g02643 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 690 731 IPR001680 GO:0005515
Csa05g02643 840 Gene3D - 172 287 IPR015943 GO:0005515
Csa05g02643 840 Gene3D - 2 171 IPR015943 GO:0005515
Csa05g02643 840 SUPERFAMILY WD40 repeat-like 686 836 IPR036322 GO:0005515
Csa05g02643 840 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 35 727 IPR011047 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02643 K11374 ELP2; elongator complex protein 2 - csv:101209018 1711.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02643 Csa-Chr5:27476230 Csa03g03420 Csa-Chr3:30813578 1.57E-07 dispersed
Csa05g02643 Csa-Chr5:27476230 Csa07g01715 Csa-Chr7:17626903 5.56E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30