Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02652 ATGGAGAGAACTTGTGAATTCTGTGCTGCATTGAGGCCAATTATTTACTGTACCCCTGATGCAGCTCACCTTTGCCTTCCCTGTGATGCCAAAGTTCATTCAGCCAATGCACTTTCAAGTCGACATCTTCGAACGCTCTTGTGCGAATTTTGCCGAAGTTTCCCTACTTATCTTCAATGTTTAGATCATCAGATGTTTCTGTGCCGTGGCTGTGATCGAACCCTTCATGTTTCCTCTTCCCAACACCAGAAAAGGATTATCAGAGGATACATGGGATGTCCTTCAGCCAAGGATTTTGCAGCACTTTGGGGGTTTCATGTACACGAAGTTGACAAAGCTAAGTTTGTGTCCACTTCTGGCTCTGAATCTTCCAGTGTTGTTAAGACTTTTGACGCACCGGGACGAAGTCGTTCACATATAGCTGCAGCTGAAAACAAGGTGCGCTACAAAGGTCAAGAAAAGGGCACTTCATTCATTTTACAACAAATTCTCGAGTTGAGCCGTCTCCAGCTTGTAAAGAAGAATATCCATTCACCTTTGATTCTTGGTGAGGGAAAAGATGGTGCGACTTCTTTAAAGACTTGTGCCTCGGAAAAGTTTGAACAGTCTCTTAATGAACACGTGCACCATTCCGAAGATCGCAGTACTGGTATTCAACAAAGGGACAACTTACTTCAGGAGCTGAAGATGACTTCGTTTACTCAGCTCGAGAGTTTTCCAATGTCATCCCCTATTTTGCTTCCTTTCCATGGAGAATCCCTTTGGCATTGTAAAAGTCCAGCTGAAAGTAGTCAGCTATGGTCTCAAAATATGCAAGACCTCGGAGTTTGTGACGAGCTTGTTTGTCGCGATGATTTCAACATGCCTGAAGTTGATTTAACGTTCCAGAACTTTGACGAGATATTCAACAGCGATCAAGATCCTACTGGTGGGTTGTTCGATAATAAAGACGAGTCATACTCGTACTCCTCTATGGACAAGGATATGTCACTTAGTAAATCAGATAATCGCGATGGAAAAGGGGTGGAGGCAAGCTCAGCGACCTCATCATCTTGCATCTTCTCATATGCTCTCATGGACAAAGATAGTGAACCCTCTGATGAAGTTTGTAACCATCCCATGAGTACAAAAATTGAATCTGCTCGTCCAATCCAACCCTCCCTTTCAACTTTGTCATTTGCTGATTCAAGGATGAGTCTTGACAGTGCAGCAACAGATTTCCCTGATCGGGCAAGAGGCGAACCTTCATGTAGCTCGCCTTACCATCGTGACCGTAAACACTCCGTGTCCCTCAACAATGTCGACGCTGCAACAAAAATTTACAAAGAAAAACAGCAGTTTCAACTACAAGAGAAACAAATCCGACGAAAGGCCAGATCTCTTGTGAAGAAACGAGTGAAAGGAAGATACGAAAAGGGCGAACGATATGACTCTAGTACCGTTGCGTTCAGTCGAAGCTATTGA 1464 43.85 MERTCEFCAALRPIIYCTPDAAHLCLPCDAKVHSANALSSRHLRTLLCEFCRSFPTYLQCLDHQMFLCRGCDRTLHVSSSQHQKRIIRGYMGCPSAKDFAALWGFHVHEVDKAKFVSTSGSESSSVVKTFDAPGRSRSHIAAAENKVRYKGQEKGTSFILQQILELSRLQLVKKNIHSPLILGEGKDGATSLKTCASEKFEQSLNEHVHHSEDRSTGIQQRDNLLQELKMTSFTQLESFPMSSPILLPFHGESLWHCKSPAESSQLWSQNMQDLGVCDELVCRDDFNMPEVDLTFQNFDEIFNSDQDPTGGLFDNKDESYSYSSMDKDMSLSKSDNRDGKGVEASSATSSSCIFSYALMDKDSEPSDEVCNHPMSTKIESARPIQPSLSTLSFADSRMSLDSAATDFPDRARGEPSCSSPYHRDRKHSVSLNNVDAATKIYKEKQQFQLQEKQIRRKARSLVKKRVKGRYEKGERYDSSTVAFSRSY* 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27519572 27522236 + CsaV3_5G034710.1 Csa05g02652 531039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02652 487 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 423 - -
Csa05g02652 487 MobiDBLite consensus disorder prediction 306 329 - -
Csa05g02652 487 SMART bboxneu5 1 47 IPR000315 GO:0008270
Csa05g02652 487 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 423 - -
Csa05g02652 487 MobiDBLite consensus disorder prediction 306 344 - -
Csa05g02652 487 CDD Bbox1_BBX-like 5 47 - -
Csa05g02652 487 MobiDBLite consensus disorder prediction 406 426 - -
Csa05g02652 487 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02652 - - - csv:101214613 963.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02652 Csa-Chr5:27519572 Csa07g00235 Csa-Chr7:1863318 1.65E-24 dispersed
Csa05g02652 Csa-Chr5:27519572 Csa06g00975 Csa-Chr6:7889202 3.02E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g369 . . . . . . . . . Cmo18g00997 . Cma18g00990 . Car18g00911 . Cpe09g00327 . Bhi07g01277 . . . . . . Cla05g02266 Cam05g2436 Cec05g2456 Cco05g2500 Clacu05g2430 Cmu05g2293 Cre05g2411 . . . . Lsi04g00215 Csa05g02652 Chy10g01184 Cme10g00220 Blo06g01044 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009707 1 4 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 2 1 2 1 1 32