Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02653 ATGAAAGACCGCTCTCCTTCATCCAATGCCGCTGTCTACGTCCCTCCTCACATCCGTCTCCGCTCCGTTGTTACTCCTAATAATTCATCTCCTGCTTCCGCTGTTGACTGCAAGCTCAAGACGGCTCCACCATCGCTGCTCGATTCAGGAACCACTGCTTCGCCTTGCCTGCATGCTCGATCTCAAGAACTGCTCCCGACGGGGAACTCGCGTTTGCAGTGTGATACGGCCTACAGCGATGGAGCTCCTACGGACAGTTGGAGTTTTAATTTCGAGTGTTCGCATCAATCGGGTATTGCACCTTCTGTAAACATTGATTTGTGGAAAAGGAAGTTAGCTTTACTTTTACGTGACAAGGAGAAGCAAGAGTTGATTTCAAGGGAGAAAAAAGATAGACATGACTTTGAGGAAATAGCTGCTTTGGCAAGTAGAGTGGGACTTTATAGCCATCTATATGCCAAAGTTGCTGTTTTTAGTAAGGTCCCATTGCCGAACTACAGATTTGATTTGGATGATCGGCGTCCACAGAGAGAGGTCTCTTTGCCTCCTGGGTTGCTTAGAAGAGTTGATGAACATTTGGGAGAATTTCTCTCTCAAAAGTCTAGGTGTAAAGGTTTTCAAGATATCTCTGTCTCTAGAACAAGCAGCAGTGGAAGCATTGCTACAGATGAAGGGCTTTTTGAGCAACCTGAGCCACAAGGATCTAGTAAGGCTGTGATGGAAAAAATTCTTTGGAGGAGAAGTTCACATCTGCGTGATCAACAGCAAGCTTGGCAGTCATCTCTTGAAGGAAGAGAAATACTGGAATTCCGGAGAAATCTTCCTGCTTACAAGGAGAAGGATGCATTATTGGACACAATCTCACAGAATCAGGTTATTATTATTTCAGGTGAAACTGGTTGTGGCAAGACTACGCAAGTTCCCCAGTTCATTTTGGAATCAGAAATAGAATCACTGCGTGGGGCTGTTTGCAGCATCATATGTACACAGCCAAGACGAATATCGGCTATGTCTGTCTCTGAGAGAGTTGCTTTTGAAAGGGGGGAGAAATTGGGTGAATCTGTTGGTTATAAAGTGCGGCTGGAGGGTATGAAAGGGAGGGATACTCATCTTCTCTTTTGCACTACGGGTATCTTGTTGAGAAGATTGCTGGTTGATAGAAATTTGAAAGGCATAACTCATGTTATTGTTGATGAAATTCACGAACGTGGAATGAATGAAGATTTTCTACTCATTGTCCTGAAAGATCTCCTTCCTCGTCGACCAGAATTGAGGTTGATTCTAATGAGTGCAACTTTAGATGCAGAACTTTTCTCATCCTACTTTGGTGGGGCTCAAATAATTCACATTCCGGGATTCACACACCCTGTCCGAACTCATTTTCTGGAAGATATTCTAGAAATGACAGGTTACAGATTAACTCCATACAATCAAATAGATGATTATGGTCAGGAGAAGACGTGGAAAATGAGCAAACAAGCACCAAGAAAGAGGAAAACCCAGATTGCCTCTACCATTGAGGATGCCCTTACAGCAGCTGATTTTAAGGAGTACAGTCTTCAAACTCAGGAGTCTTTATCGTGTTGGAATCCAGACTGTCTTGGTTTTAATCTCATAGAATATCTTCTAGTCAGGATATGTGAGAGCGAAACACCTGGAGCTATTCTTGTTTTTATGACTGGGTGGGATGACATCAGTTCTCTCAAGGAGAAACTTCAGTCTCATCCTTTATTAGGAGATCCAACTCGTGTCATGTTGTTGGCATGCCATGGCTCAATGGCCAGTTCAGAGCAGAGGTTAATTTTTACTGAACCTGACAAAGGAGTGAGGAAGGTAGTGCTTGCAACAAATATTGCCGAGACAAGTATCACGATAAATGATGTCGTGTATGTTCTTGACTGTGGAAAGGCAAAAGAAACATCATATGATGCTTTAAATAACACTCCTTGTTTGCTTCCTTCTTGGATATCCAAGGTTTCTGCTCAACAAAGAAGAGGAAGGGCTGGCCGTGTTCAACCAGGAGAATGCTACCATTTATACCCTAGGTGTGTGTTTGGTTCTTTTTCTGAGTATCAGCTACCAGAAATTTTGAGAACACCTTTACAGTCCCTCTGCTTGCAAATAAAAAGCTTAAAGCTTGGAAGTATATCGGAGTTTCTATCTAGGGCTTTGCAGTCACCAGAGCTACTTGCGGTTCAGAATGCTATTGAATATTTGAAGATCATCGGAGCATTCGATGAGAGTGAAAATCTTACTGTTTTAGGTCGTTATTTAACTATGCTCCCAATGGAACCAAAACTGGGAAAGATGTTGATAGTAGGTGCTATCTTCAATTGCTTGGATCCTATTATGACTGTTGTTGCTGGCCTCAGTGTGAGAGACCCTTTTCTAACGCCACTTGAGAAGAAGGATGCCGCAGAGGCTGCAAAATCCCAATTTTCTCAAGATCATAGTGATCACCTTGCTATTATCCGGGCTTATGGGGCATGGAAAGAAGCCGAGAGGAACTATGGTGGATATGACTTTTGTTGGAAGAACTTCCTTTCTATACAATCGATGAAGGCTATTGATTCTTTAAGGAAGGAGTTTTTTTCTTTGCTTAGAGATACTGGCTTGGTTGATGGGTACTCAGACACCTACAATGCCTGGAGTCTTGATGAACAACTCATACGTGCAGTTATTTGCAATGGCCTCTATCCTGGAGTTTGCTCCGTTGTGCAAAATGAGAAATCATTCTCTCTCAAAACTATGGAGGATGGCCAGGTGCTTCTGTATTCGAACTCGGTGAATGCTCGAGAGTCGAGGATTCCATATCCATGGATAGTTTTCAATGAGAAGATTAAAGTGAACTCCATTTTCCTTAGAGATTCAACAGCTATCTCTGACTCGATGCTGCTTCTCTTTGGTGGAAGCATCTCAAAAGGTGATCATGAGGGACACTTGAAAATGTTGGGCGGTTTTTTGGAATTTTTTATGAAACCTGATTTAGCAGAGACATATCAGAAATTGAGAGTGGAACTTGAAGAGCTTATACGGATAAAGCTACTAAATCCAAAGATGGACTTGCACTCCCACCATGAGCTCCTATCTGCTGTACGCTTGCTTATTTCAGAAGACCAGTGTGAAGGTCGATTTGTTTTTGGCCGCCAGATCCTTCAGCAGCCCTCCAAGACATCAGCTCCAGCAGCAGCAGCAGCACCACCACCAACTGCTGTTTCAAGAATTGAAAGTGGACCTGGTGGGGACAATTCCAAGAGTCAGCTCCAGACTTTACTCACGAGGGCTGGATATGCTGCACCCATCTATAAGACTAAGCAATTGAAGAACAATCAATTTCGAGCAACTGTGGAATTTAATGGACTGCAAATTATGGGACAACCTTGTACCAACAAAAAGAATGCTGAAAAGGATGCAGCAGCCGAGGCTCTTGAGTGGTTGATGGGTGGAAATCAGATGGGGCACGACTATGTCAACCAAATGTCTATGATGTTAAAAAGGAGCAAGAAGGATCATAACTGA 3519 43.08 MKDRSPSSNAAVYVPPHIRLRSVVTPNNSSPASAVDCKLKTAPPSLLDSGTTASPCLHARSQELLPTGNSRLQCDTAYSDGAPTDSWSFNFECSHQSGIAPSVNIDLWKRKLALLLRDKEKQELISREKKDRHDFEEIAALASRVGLYSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVSLPPGLLRRVDEHLGEFLSQKSRCKGFQDISVSRTSSSGSIATDEGLFEQPEPQGSSKAVMEKILWRRSSHLRDQQQAWQSSLEGREILEFRRNLPAYKEKDALLDTISQNQVIIISGETGCGKTTQVPQFILESEIESLRGAVCSIICTQPRRISAMSVSERVAFERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIHIPGFTHPVRTHFLEDILEMTGYRLTPYNQIDDYGQEKTWKMSKQAPRKRKTQIASTIEDALTAADFKEYSLQTQESLSCWNPDCLGFNLIEYLLVRICESETPGAILVFMTGWDDISSLKEKLQSHPLLGDPTRVMLLACHGSMASSEQRLIFTEPDKGVRKVVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVFGSFSEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGAFDESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPIMTVVAGLSVRDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGAWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDEQLIRAVICNGLYPGVCSVVQNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWIVFNEKIKVNSIFLRDSTAISDSMLLLFGGSISKGDHEGHLKMLGGFLEFFMKPDLAETYQKLRVELEELIRIKLLNPKMDLHSHHELLSAVRLLISEDQCEGRFVFGRQILQQPSKTSAPAAAAAPPPTAVSRIESGPGGDNSKSQLQTLLTRAGYAAPIYKTKQLKNNQFRATVEFNGLQIMGQPCTNKKNAEKDAAAEALEWLMGGNQMGHDYVNQMSMMLKRSKKDHN* 1173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27531154 27544227 + CsaV3_5G034720.1 Csa05g02653 531040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02653 1172 PANTHER ATP-DEPENDENT RNA HELICASE 76 1090 - -
Csa05g02653 1172 SMART ha2_5 734 824 IPR007502 GO:0004386
Csa05g02653 1172 Gene3D - 231 452 IPR027417 -
Csa05g02653 1172 CDD DEXHc_RHA-like 290 450 - -
Csa05g02653 1172 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 890 972 IPR011709 -
Csa05g02653 1172 Gene3D - 714 825 - -
Csa05g02653 1172 SMART helicmild6 566 672 IPR001650 -
Csa05g02653 1172 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1083 1148 IPR014720 -
Csa05g02653 1172 CDD SF2_C_RHA 455 680 - -
Csa05g02653 1172 SMART ultradead3 272 465 IPR014001 -
Csa05g02653 1172 MobiDBLite consensus disorder prediction 1058 1084 - -
Csa05g02653 1172 Gene3D - 537 690 IPR027417 -
Csa05g02653 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 838 IPR027417 -
Csa05g02653 1172 Pfam Helicase conserved C-terminal domain 540 671 IPR001650 -
Csa05g02653 1172 Pfam Double-stranded RNA binding motif 1084 1146 IPR014720 -
Csa05g02653 1172 SUPERFAMILY dsRNA-binding domain-like 1079 1161 - -
Csa05g02653 1172 Pfam DEAD/DEAH box helicase 283 434 IPR011545 GO:0003676|GO:0005524
Csa05g02653 1172 SMART DRBM_3 1084 1147 IPR014720 -
Csa05g02653 1172 Gene3D - 1071 1150 - -
Csa05g02653 1172 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 284 451 IPR014001 -
Csa05g02653 1172 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 76 1090 - -
Csa05g02653 1172 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 538 712 IPR001650 -
Csa05g02653 1172 Pfam Helicase associated domain (HA2) 735 812 IPR007502 GO:0004386
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02653 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101208774 2281.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02653 Csa-Chr5:27531154 Csa05g02682 Csa-Chr5:27721015 0 dispersed
Csa01g01266 Csa-Chr1:7911317 Csa05g02653 Csa-Chr5:27531154 1.07E-94 transposed
Csa02g01817 Csa-Chr2:17446788 Csa05g02653 Csa-Chr5:27531154 2.09E-78 transposed
Csa03g01932 Csa-Chr3:15151736 Csa05g02653 Csa-Chr5:27531154 5.15E-178 transposed
Csa03g03498 Csa-Chr3:31324631 Csa05g02653 Csa-Chr5:27531154 0 transposed
Csa04g00077 Csa-Chr4:437087 Csa05g02653 Csa-Chr5:27531154 1.97E-52 transposed
Csa04g00753 Csa-Chr4:5145419 Csa05g02653 Csa-Chr5:27531154 1.24E-62 transposed
Csa04g00903 Csa-Chr4:6536795 Csa05g02653 Csa-Chr5:27531154 4.86E-59 transposed
Csa07g01647 Csa-Chr7:16897718 Csa05g02653 Csa-Chr5:27531154 2.32E-89 transposed
Csa07g01927 Csa-Chr7:19079024 Csa05g02653 Csa-Chr5:27531154 2.00E-105 transposed
Csa01g00410 Csa-Chr1:2569251 Csa05g02653 Csa-Chr5:27531154 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70