Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02661 ATGGAGAACAGGAAGAATTGCTCCATGGAAGAGAGTTTACTGGCGAAGCAGAAGGAAACCAATCTCTCTTCAACAACTACAGCTGTTTACTTGGAAGAGATGAAGAGAGTTGGATTCTTGGCCGCGCCGTTGGTCATCGTCACTTTCTCTCAGTTTATGTTGCAGATTATTACGATGATGATGGTCGGTCATCTCGGTGCTCTTGCACTCTCGAGCACCGCCATAGCCGTTTCCATTTCTGCAGTTACAGGCTTCAGCGTTCTCTTAGGTTTGTCCAGTGCCCTCGAAACTCTATGCGGACAAGCTTATGGAGCTCAGCAATTTGAAAAAGTTGGAGTTCAGACTTACACTGCTATCTTTTGTGTCTTCTTAATTTGCTTTCCTCTGTCCCTAATTTGGCTTTTCTTGGAAAAACTACTTCTATTCGTTGGCCAAGATCCTCTGATTTCGCACGAAGCTGGGAAATTCATTGTTTGGCTGATTCCTGGGCTCTTTGCTTCTGCATTTCTCCAACCACTTGTGAGATATTTCCAGGCACAAAGCTTAGTAATTCCCATGGTCATTTTCTCTTGCATCACTCTCTTCTTCCACATACCACTCTGTTGGTTCATGGTGTACAAGACTGGACTTAGAAATCTGGGAGGAGCATTATCTATGAGTTTTTCATACTGTCTCAATGTGATTTTGCTTGCATTATACATGAAATTCTCACCCAAGTGTGAGAAAACTCGTGGAGTTATTTCTATGGAGCTGTTTCAAGGAATTCGAGACTTCTTTAGCTTGGCAGTTCCTTCTGCGGTGATGGTTTGCCTTGAATGGTGGTCATTTGAGCTGATTATCTTACTATCAGGGCTACTGCCGAATCCAGAGCTTGAAACTTCAGTTTTATCTGTCTGTCTTCAGACAATTGCTTCCCTTTATTCAATAGCATATGGACTTGGTGCTGCAGGAAGCACAAGAGTTTCCAATGAACTAGGTGCTGGGAATCCACAGGCGGCTCGTCGAGCAACAAGGGTTGTTTTATTCCTCGCCATCTTGGAAACCTTAACATTGAGCACAATCCTTTTTGCCCTTCGTCACATCTTTGGTTATACTTTCAGCAATGAGAAGGATGTTGTAGCTTATGTCGCCTCCATGGCACCTCTGGTTTGCATATCCGTGCTAATGGACGGAATACAGGGAGTCCTTTCAGGCATTGCTAGAGGGTGTGGATGGCAGCACATTGGTGCATATGTAAACTTCGGGTCCTTCTATCTTTGTGGGATTCCAGTTGCTGCCCTTCTTGGTTTCTTGGTTCATATGAAAGGAAGAGGTCTTTGGATTGGCATACAAATGGGTGCTTTTGTGCAAGTCACGTTGCTCTCCTTCATTACAAGTCGAATAAATTGGGAAGAACAGGCGAGAATGGCCAGTGATAGGCTTTTGATTTCAGAGGTCAATTACTCAGAAGGTTACTGA 1458 44.03 MENRKNCSMEESLLAKQKETNLSSTTTAVYLEEMKRVGFLAAPLVIVTFSQFMLQIITMMMVGHLGALALSSTAIAVSISAVTGFSVLLGLSSALETLCGQAYGAQQFEKVGVQTYTAIFCVFLICFPLSLIWLFLEKLLLFVGQDPLISHEAGKFIVWLIPGLFASAFLQPLVRYFQAQSLVIPMVIFSCITLFFHIPLCWFMVYKTGLRNLGGALSMSFSYCLNVILLALYMKFSPKCEKTRGVISMELFQGIRDFFSLAVPSAVMVCLEWWSFELIILLSGLLPNPELETSVLSVCLQTIASLYSIAYGLGAAGSTRVSNELGAGNPQAARRATRVVLFLAILETLTLSTILFALRHIFGYTFSNEKDVVAYVASMAPLVCISVLMDGIQGVLSGIARGCGWQHIGAYVNFGSFYLCGIPVAALLGFLVHMKGRGLWIGIQMGAFVQVTLLSFITSRINWEEQARMASDRLLISEVNYSEGY* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27587794 27594053 - CsaV3_5G034800.1 Csa05g02661 531048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02661 485 PANTHER PROTEIN DETOXIFICATION 14 32 470 - -
Csa05g02661 485 PANTHER MULTIDRUG RESISTANCE PROTEIN 32 470 - -
Csa05g02661 485 TIGRFAM matE: MATE efflux family protein 43 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Csa05g02661 485 Pfam MatE 43 202 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Csa05g02661 485 Pfam MatE 264 426 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Csa05g02661 485 CDD MATE_eukaryotic 33 468 IPR045069 GO:0042910|GO:1990961
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02661 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101213643 927.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02334 Csa-Chr4:23805843 Csa05g02661 Csa-Chr5:27587794 6.83E-108 dispersed
Csa05g02659 Csa-Chr5:27568556 Csa05g02661 Csa-Chr5:27587794 0 dispersed
Csa05g02661 Csa-Chr5:27587794 Csa05g03183 Csa-Chr5:31551972 4.33E-157 dispersed
Csa05g02660 Csa-Chr5:27575186 Csa05g02661 Csa-Chr5:27587794 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g388 . . . . . . . . . . . . . . . . . Bhi07g01251 . . Lac13g0551 Hepe01g1148 . . . . . . . . . . . . Cone9ag0440 . Csa05g02661 Chy10g00269 Cme10g00210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82