Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02665 ATGAGCAGCGAAGCTAAGGAAGTCACATTCGAAAAAGCCACAGCGGCTGTCGAAGAGCTGTATCTCATCAGAGACACCTTTTTCCCTGTAAATCCCGATGACAAAACTTCCAAATTACGGGAGCTATCGGATCTTGCTCTCAAGATCCTCGATTCCATTCCTCCAGAACAAAGGAGATCACCTTTGCAGCGTGCTATGTATGAATATCTAAGAGGAAAAATGTTGGATGTATTTCCGGAATATAGAAAAGAAGCAGAGGATCACCTCTCCAAAGCTGTTAAGTTGAATCCCTCTCTCGCGGATGCTTGGCTATGTTTAGGCAACTGCATTTGGAAAAAAGGAGATCTATCTTCAGCAAAGAACTGCTTTACTTTAGCATTAAACAAGCGCCCTGAGAAAAAGTTACTTTGTCAGTTATCAATGCTTGAAAGAAAAATGGCTCAAGGTACTGAGAATGAGGCAAAACTTGTAGAAGAAAGCATTCAACATGCAAAAGAAGCAGTTACTTTGGATGTGAAAGATGGAAACTCTTGGTATAATCTAGGAAATGCATGCCTTACAAGTTTTTTTGTTACTGGAGCGTGGGATCATAGTAAGCTTTTGCAATCTTTGAAGGCATATCAGAATGCGGAAAAAGATGAAAAAATGTTGTCAAATCCAGACTTGTATTTTAATTGTGCAACTGTTAACAAATATCTGGAGAACTATGACAGGGCCCTAAGTGGATTTGAGGCTGCTGCTTTGAAGGATCCTAGTCTTAGTGCTACTAGGGAGGTCCACAAGATGGTGACTCTTCTTGACAAATTGGATAACATGTTGAAGGCACATGCTAAATCACGAAAAGGTGCGTCTTCGCCATCATCTGTGGATGCTATTAGTTCGAACTTCTCGTACAAGAGAGCCACTATAAGCCATCTGTCTGAGGGTCTGAACAAAACAGTGGCAGTAACTGGGAAGGTGTTGTTCTTCATCAAGCATGATAGTCTTGCCCCATTATATTACTTGGCGTGTGATTCAAATCAAACATGCTTTGTTTTATCATTGTATGGCATGCGGAATGATACGGTTAAGGAAGGAGATCAGATTACACTAGTAGAACCATATTATCGCAACCTCGGTTTTTCATGGAAGGGAAAGCATTACGAATTCAAATCAATCCGCGTCGATTTCTTAGAACAAGTTCTTGTCAATGGAAAAGCTCCCTCCACCCATCAGGCAGTCCGGGCATCAATATACGCCCAACACAAACCCTGA 1254 41.39 MSSEAKEVTFEKATAAVEELYLIRDTFFPVNPDDKTSKLRELSDLALKILDSIPPEQRRSPLQRAMYEYLRGKMLDVFPEYRKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLSSAKNCFTLALNKRPEKKLLCQLSMLERKMAQGTENEAKLVEESIQHAKEAVTLDVKDGNSWYNLGNACLTSFFVTGAWDHSKLLQSLKAYQNAEKDEKMLSNPDLYFNCATVNKYLENYDRALSGFEAAALKDPSLSATREVHKMVTLLDKLDNMLKAHAKSRKGASSPSSVDAISSNFSYKRATISHLSEGLNKTVAVTGKVLFFIKHDSLAPLYYLACDSNQTCFVLSLYGMRNDTVKEGDQITLVEPYYRNLGFSWKGKHYEFKSIRVDFLEQVLVNGKAPSTHQAVRASIYAQHKP* 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27616636 27623741 - CsaV3_5G034840.1 Csa05g02665 531052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02665 417 ProSiteProfiles TPR repeat profile. 100 133 IPR019734 GO:0005515
Csa05g02665 417 Gene3D Tetratricopeptide repeat domain 2 276 IPR011990 GO:0005515
Csa05g02665 417 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 9 341 - -
Csa05g02665 417 Pfam Tetratricopeptide repeat protein 5 OB fold domain 298 409 IPR032076 -
Csa05g02665 417 Coils Coil 147 167 - -
Csa05g02665 417 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 9 341 - -
Csa05g02665 417 SUPERFAMILY TPR-like 83 244 IPR011990 GO:0005515
Csa05g02665 417 SMART tpr_5 100 133 IPR019734 GO:0005515
Csa05g02665 417 SMART tpr_5 220 253 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02665 K24928 TTC5; tetratricopeptide repeat protein 5 - csv:101212286 830.091
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g394 . . . . . . . . Cmo04g01542 . . . Car04g01530 . Sed06g1921 . Cpe01g01313 Bhi07g01245 Tan04g0785 Cmetu10g0428 . Hepe01g1144 . . Cla05g02259 Cam05g2428 Cec05g2445 Cco05g2489 Clacu05g2417 Cmu05g2284 Cre05g2402 . . . . Lsi04g00202 Csa05g02665 Chy10g01196 Cme10g00206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003498 1 3 0 1 1 1 2 2 1 1 1 1 2 2 2 2 1 2 2 1 2 0 2 1 3 1 2 2 2 1 45