Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02685 ATGAACTCACTTCCATTCATTTTCCTTCTCCTTCTCTCTCTCAACTTCGCCGGAGCTTCCGTTTCTCCTCCGCCTTCTACCGCCCTCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATTCTCTCCACTATCCGCTTCTCCCCTTCCGATCCATACGGCTACGGCAAATTTTCCGTCAAGCAATGTATCAAACAAGCGACCAAAATGTCGACAGTAATCGGCGACTATCTCAACCGAGGACGCGATTCGAGGCTGAATCGGCCAGAGGCCGGCGCTCTGAGTGACTGCAGAGACCTCTCCGATTTGAATGTGGAATTTCTTCGGTCGATTGAGAGGGTACTGGAAGCGGCAGAGGGAGTCGATGAGGAGCTGGTGGAGCGCGTTGAGAGTATTTTGAGCGCGATCGTGACGAACGGCCAGACTTGCATCGACGGATTGGTGGAATCGAGGAGTAGTCTGGGAAATGCGCTATCGGGGCCGCTTTTGAGCGCTGGAGAGCTGTACAGTGTGTCGTTGGGATTGGTTTCGAACGCGATGTCGCGGAGGTGGAAGAAGCGTAGGGAGAAGGGAGGCGGAAACGGAGGAGTTCCGGGGGGTGGACGGAGCAGAGAGCCATTGGACACGCTGATCAAGGGACTACACAAAATGGAACCATGCAACAACCAATCCACAAAGTGCTTAGGAAGGCAGCGTTTGTTAACTGATTTAGGCAGCACAGGAATTTTGATAAACAACACTGTGGTTGTTAGCTCAACTGGTGCTGACAACTTCACATCAATTGGAGATGCAATTGCATTTGCTCCCAACAATTCAATGCCTCAAGATGGCTACTTTGTTATCTATGTCAAGGAAGGATACTATGAAGAATATGTCGTCGTCCCCAAATTCAAAACCAATATAATGCTCATCGGAGATGGCATTAACCGAACCATCATCACTGGGAACCACAACGTCGTTGATGGTTGGACAACTTATAATTCTTCTACCTTCACTGTTTGTGGGGATGGATTTGTTGCAATAGATGTGACATTCAGGAACACAGCAGGACCCGAAAAGCACCAAGCAGTAGCATTAAGAAACAGTGCAGATCTCTCAACATTCTACCGCTGTAGTTTCGAAGGATATCAAGACACTCTTTATGTACATTCCCTAAGACAATTCTATAGGGAATGTGATATTTATGGAACTGTAGACTTCATTTTTGGCAATGCAGCTGCAGTTTTCCAGCAATGCAATCTCTATGCAAGAAAGCCACTCCCCAACCAAAAAAACGCATTCACCGCACAGGGTCGAACCGATCCGAACCAAAACACAGGCATCTCAATCCACAACTGCACCATCAAGGCTGCACCCGACTGGGTGATGGATTCGAATACGACAACGACAAACTATCTCGGTCGGCCATGGAAGCAGTACTCTAGGACGGTGTATATGCAATCTTATATTGGGGATTTGATAAGCCCAGTGGGGTGGTTGGAATGGAATGGAACAGTTGGATTGGAGACATTGTACTATGGAGAGTATGAGAATTATGGACCTGGAGCTAATACAAGTTTGAGAGTGAATTGGCCTGGATTTAGCTTGTTGAATGTTACACAAGCTATGAATTTTACTGTCTATAATTTCACCATGGGAGATACTTGGTTGCCTTATACTGATATTCCTTTCTCTGGAGGTTTGCTAATCAAGTAA 1698 47.06 MNSLPFIFLLLLSLNFAGASVSPPPSTALCKSTLYPKLCRSILSTIRFSPSDPYGYGKFSVKQCIKQATKMSTVIGDYLNRGRDSRLNRPEAGALSDCRDLSDLNVEFLRSIERVLEAAEGVDEELVERVESILSAIVTNGQTCIDGLVESRSSLGNALSGPLLSAGELYSVSLGLVSNAMSRRWKKRREKGGGNGGVPGGGRSREPLDTLIKGLHKMEPCNNQSTKCLGRQRLLTDLGSTGILINNTVVVSSTGADNFTSIGDAIAFAPNNSMPQDGYFVIYVKEGYYEEYVVVPKFKTNIMLIGDGINRTIITGNHNVVDGWTTYNSSTFTVCGDGFVAIDVTFRNTAGPEKHQAVALRNSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQQCNLYARKPLPNQKNAFTAQGRTDPNQNTGISIHNCTIKAAPDWVMDSNTTTTNYLGRPWKQYSRTVYMQSYIGDLISPVGWLEWNGTVGLETLYYGEYENYGPGANTSLRVNWPGFSLLNVTQAMNFTVYNFTMGDTWLPYTDIPFSGGLLIK* 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27748797 27754199 + CsaV3_5G035040.1 Csa05g02685 531072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02685 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 179 IPR035513 -
Csa05g02685 565 SMART PMEI_2 21 176 IPR006501 GO:0004857
Csa05g02685 565 MobiDBLite consensus disorder prediction 186 205 - -
Csa05g02685 565 PANTHER PECTINESTERASE 6 562 - -
Csa05g02685 565 SUPERFAMILY Pectin lyase-like 244 561 IPR011050 -
Csa05g02685 565 Gene3D - 243 562 IPR012334 -
Csa05g02685 565 Pfam Pectinesterase 249 548 IPR000070 GO:0030599|GO:0042545
Csa05g02685 565 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 47-RELATED 6 562 - -
Csa05g02685 565 Pfam Plant invertase/pectin methylesterase inhibitor 28 174 IPR006501 GO:0004857
Csa05g02685 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Csa05g02685 565 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Csa05g02685 565 CDD PMEI-like_3 28 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02685 Csa-Chr5:27748797 Csa07g01870 Csa-Chr7:18722250 0 dispersed
Csa01g00907 Csa-Chr1:5649021 Csa05g02685 Csa-Chr5:27748797 4.74E-86 transposed
Csa02g01545 Csa-Chr2:14628980 Csa05g02685 Csa-Chr5:27748797 1.96E-155 transposed
Csa03g04485 Csa-Chr3:39085066 Csa05g02685 Csa-Chr5:27748797 3.31E-171 transposed
Csa05g00961 Csa-Chr5:8105560 Csa05g02685 Csa-Chr5:27748797 4.41E-87 transposed
Csa05g02010 Csa-Chr5:23451164 Csa05g02685 Csa-Chr5:27748797 6.08E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02685 K01051 - csv:101206112 1094.34